Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq3603 567 1e-156 seq74 158 2e-33 seq199 129 9e-25 >seq3603 Length=163330 Score = 567 bits (628), Expect = 1e-156 Identities = 709/972 (73%), Gaps = 0/972 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | ||| |||| ||||| ||||| | ||||| ||| | | | | Sbjct 1425 ACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 1366 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 1365 GCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 1306 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| || ||||||||||| || | Sbjct 1305 CGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATT 1246 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || ||||| || ||||| || || ||||||||||| ||| | ||||| Sbjct 1245 CCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCGATCTGGGAAGCGGCATCCGTTGAT 1186 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||||||||| |||| |||| || | | |||||| | ||||| | Sbjct 1185 GAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1126 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | | ||||||||| || | | | |||||| | |||||||| Sbjct 1125 GCTTGTTACATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATT 1066 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| ||| || ||| | | || ||| | Sbjct 1065 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATT 1006 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || |||||||||| |||||| || ||||||||||| || ||||||| |||| Sbjct 1005 GGTCAAGGAAGCTTCTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATG 946 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || ||||||||||| |||||||||||||| ||| Sbjct 945 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCT 886 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | || Sbjct 885 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTA 826 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || ||||| | |||||| || | ||||||| ||||| |||||||| Sbjct 825 ATCAGGGAAACCACTGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 766 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || ||||||||||| || ||||| ||||| || | ||||||||||| || Sbjct 765 GAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 706 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||||||||| || | | | || |||||||| || || | ||||| | ||||| Sbjct 705 AGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 646 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| || || ||||| |||||||| || |||||||| |||||| Sbjct 645 TGGTTTACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 586 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || ||| ||| || ||| |||||||| || || | ||| | Sbjct 585 CAATCTGTAGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGT 526 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| ||||| || ||||| |||||||||||||| ||||| | Sbjct 525 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 466 Query 216275 GCTGCTGCTGAA 216286 ||||||| |||| Sbjct 465 GCTGCTGTTGAA 454 >seq74 Length=3028681 Score = 158 bits (174), Expect = 2e-33 Identities = 271/392 (69%), Gaps = 1/392 (0%) Strand=Plus/Plus Query 215657 GGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTA 215716 |||||| |||||||| | |||||| || | | | ||| | ||| | | || Sbjct 694362 GGTATGCATCCTTGGATTTCTGTTGCATATTAAGGTCTTGTGGTAGATGCTACTACTGTC 694421 Query 215717 TTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCT 215776 ||| | | |||||| | ||||| || |||||||||| |||||| | || |||| | Sbjct 694422 TTCTTGATCTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGGATCT-T 694480 Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTC 215836 | || ||||||| |||| |||| ||| ||||| || ||||||| || ||||||||||| Sbjct 694481 AGTACTTTCAACTTCATGATTGTATTCTAGGCTTAGGACAACATCCTTATGCACCCATTT 694540 Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896 |||||||||||||| |||||| | ||| |||||| |||| ||| ||||| |||| Sbjct 694541 CACATGTTAGGTGTAGCTGGTATATTCTATGGTTCTCTGTTTGGTGCTATGCATTGTTCC 694600 Query 215897 CTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTAC 215956 || || ||| | ||||||| || || || || | | | | || | ||||| Sbjct 694601 TCGGTAACTTCTATTTTAATCAGGGAAACCACCGAAAATTATTTTGTTAATGAAGGTTAT 694660 Query 215957 AAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGC 216016 ||| | || | | ||||| || || || ||| | | || ||||| ||||| Sbjct 694661 GGATTCAGTTTAGGGAAAGAAACTTATAATATTGTAACCACCCATGGTTATTTTGGCGAA 694720 Query 216017 CTCATCTTCCAATACGCATCTTTCAACAACTC 216048 || ||||||||||| || ||||||||| || Sbjct 694721 CTGATCTTCCAATATGCTAGTTTCAACAATTC 694752 >seq199 Length=1013994 Score = 129 bits (142), Expect = 9e-25 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 216062 TTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACT 216121 |||||||| || || | ||||| | |||||||| ||||| | ||| || || Sbjct 992602 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACC 992543 Query 216122 ATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAA 216181 ||||| |||||||| || |||||| | |||||||| ||||| || ||| ||| Sbjct 992542 ATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGT 992483 Query 216182 GTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCAC 216241 || ||| ||||||| || || | ||| | || |||||||||||||| ||||| Sbjct 992482 GTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATGGAAGTTATGCAT 992423 Query 216242 GAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 || ||||| |||||||||||||| |||||| | ||| ||| |||| Sbjct 992422 GAACGTAATGCTCACAACTTCCCTTTAGACCTAGCTACTGTTGAA 992378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745048043387440