Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq3603 569 2e-157 seq74 174 2e-38 seq199 131 2e-25 >seq3603 Length=163330 Score = 569 bits (630), Expect = 2e-157 Identities = 716/983 (73%), Gaps = 0/983 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||||||||| ||||||||||| Sbjct 1437 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCT 1378 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| |||| ||||| || ||||| || || || Sbjct 1377 ACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGAT 1318 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | ||||| ||||| || |||||| Sbjct 1317 ATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCT 1258 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || |||||| | ||||| ||||| || |||||||| Sbjct 1257 GGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCGATCTGGGAAGCG 1198 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||||| || || |||||||||||| || || || | | |||||| Sbjct 1197 GCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTC 1138 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | | |||||||| | |||| | |||||| Sbjct 1137 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATG 1078 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 1077 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 1018 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || | ||||| ||| ||||| || || ||||||||||| ||||| ||||| Sbjct 1017 ATCTACCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 958 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||||||| | |||||||| || ||||||||||| |||||||||||||| || ||| Sbjct 957 TTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATG 898 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 897 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 838 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | ||||||| || || || || || || || || | || |||| |||| Sbjct 837 ACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAATCTGCTAATGAAGGTTACAGATTC 778 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 777 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 718 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || |||||| |||| | | || |||||||| ||| | | ||| Sbjct 717 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCT 658 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | |||||||| ||| | | ||||| |||| ||||| || ||||| ||||| Sbjct 657 GTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTAAATGGT 598 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || || | ||| ||| || || ||||| || Sbjct 597 TTCAATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGAT 538 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 || | ||| | || ||||| ||||||||||| |||||||| |||||||| ||||||||| Sbjct 537 ATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 478 Query 170659 CCACTTGACTTGGCAACTGCTGA 170681 || || ||| | || ||| ||| Sbjct 477 CCTCTAGACCTAGCTGCTGTTGA 455 >seq74 Length=3028681 Score = 174 bits (192), Expect = 2e-38 Identities = 282/402 (70%), Gaps = 13/402 (3%) Strand=Plus/Plus Query 170047 CGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTC 170106 ||| | ||||||| ||||||||| | ||| ||||||| | || ||| || || Sbjct 694356 CGTCTGGGTATGCATCCTTGGATTTCTGTTGCATATTAAGGTCTTGTGGTAGATGCTACT 694415 Query 170107 GCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGT 170166 |||| ||||| | ||||| | ||||| ||| ||||| || || |||||| |||| Sbjct 694416 ACTGTCTTCTTGATCTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGG 694475 Query 170167 ATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226 |||| || ||| || ||||||||| | |||||| | || || ||||||| ||||||||| Sbjct 694476 ATCTTAG-TACTTTCAACTTCATGATTGTATTCTAGGCTTAGGACAACATCCTTATGCAC 694534 Query 170227 CCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCAC 170286 ||||| || ||| ||| || |||||||| ||| || | || || || ||||| Sbjct 694535 CCATTTCACATGTTAGGTGTAGCTGGTATATTCTATGGTTCTCTGTTTGGTGCTATGCAT 694594 Query 170287 GGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGA----GTCACAGAA 170342 |||| ||||| ||| | ||||||| || || || || || | || | ||| Sbjct 694595 TGTTCCTCGGTAACTTCTATTTTAATCAGGGAAACCACCGAAAATTATTTTGTTAATGAA 694654 Query 170343 --CTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGA 170400 ||||||| || || || || ||||||| || || ||||| | | ||||| Sbjct 694655 GGTTATGGATTCAGTTTAGG----GA--AAGAAACTTATAATATTGTAACCACCCATGGT 694708 Query 170401 TACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAAT 170442 || ||||| ||| ||||||||||||||||| || |||||| Sbjct 694709 TATTTTGGCGAACTGATCTTCCAATATGCTAGTTTCAACAAT 694750 >seq199 Length=1013994 Score = 131 bits (144), Expect = 2e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 170458 TTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACA 170517 |||||||| ||| | | ||||||||| | |||||||| ||| | | ||||| |||| Sbjct 992602 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACC 992543 Query 170518 ATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAA 170577 ||||| || ||||| ||||| || | |||||||| || | || || | ||| Sbjct 992542 ATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGT 992483 Query 170578 GTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCAT 170637 ||| || | ||||| || || | ||| | || ||||| ||||||||||| |||||| Sbjct 992482 GTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATGGAAGTTATGCAT 992423 Query 170638 GAGCGTAATGCACACAACTTCCCACTTGACTTGGCAACTGCTGA 170681 || |||||||| ||||||||||| | ||| | || |||| ||| Sbjct 992422 GAACGTAATGCTCACAACTTCCCTTTAGACCTAGCTACTGTTGA 992379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582821749983200