Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq3603 652 0.0 seq74 192 7e-44 seq199 131 2e-25 >seq3603 Length=163330 Score = 652 bits (722), Expect = 0.0 Identities = 730/973 (75%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| ||||| || | Sbjct 476 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATA 535 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| || || | ||||| ||| || || || | | || ||||| || Sbjct 536 ATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCAACTACAGATTGGTTGAAATTG 595 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||||||||| | ||| | ||||| |||||| || || || Sbjct 596 AAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTAAACCAGATACCTACT 655 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| | ||| || || | ||||||| ||||||||| |||||| ||| Sbjct 656 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 715 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| || |||||||||||||| || |||||| Sbjct 716 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 775 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || ||||||| || ||||| | ||||| | |||| Sbjct 776 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTGGTTTCCCTGATTAAACTAGAA 835 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 836 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCT 895 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| |||| ||||| Sbjct 896 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 955 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| ||||||||||| ||||| || | || || Sbjct 956 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAGAAGCTTCCTTGACCAATTGGGTAG 1015 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 1016 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 1075 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||||||||||||||||||| | | |||||| Sbjct 1076 CGCATACCCAGACGGAAACTAAGTTCCCATTCACGACCCATGTAACAAGCTACACCAAGT 1135 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| |||| |||||| |||||||| |||| |||||| || | | Sbjct 1136 AAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGAT 1195 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || ||||| || || | ||| ||||| ||| | |||| | |||| Sbjct 1196 GCCGCTTCCCAGATCGGATAAAAGTGCAAACCGATAGCTGCAGAAGTAGGAATAATGGCA 1255 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 ||||| || || |||||||| || | ||||| |||| || || ||||| ||||| ||| Sbjct 1256 CCAGAGATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCA 1315 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| ||| ||||| || || ||||| ||| || | | || Sbjct 1316 ATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA-AGTTGCGGTCAATAA 1374 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | || ||||| |||| || | |||||| | |||| ||| | Sbjct 1375 GGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTAT 1434 Query 84944 CCAATCACAGAAG 84956 ||| | ||||||| Sbjct 1435 CCAGTTACAGAAG 1447 >seq74 Length=3028681 Score = 192 bits (212), Expect = 7e-44 Identities = 296/420 (70%), Gaps = 2/420 (0%) Strand=Plus/Minus Query 84180 AAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCG 84239 |||||||| || | |||| || ||||||||| |||||| |||||||| || || Sbjct 694772 AAGAAAAA-TGTAAAGAATGAGAATTGTTGAAACTAGCATATTGGAAGATCAGTTCGCCA 694714 Query 84240 AAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCA 84299 || || || || | | ||||||||||||||||| | || || ||| ||||| Sbjct 694713 AAATAACCATGGGTGGTTACAATATTATAAGTTTCTTTCCCTAAACTGAATCCATAACCT 694654 Query 84300 TAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCA 84359 | || | |||||| || ||||| | ||||| | |||||| || |||| | Sbjct 694653 TCATTAACAAAATAATTTTCGGTGGTTTCCCTGATTAAAATAGAAGTTACCGAGGAACAA 694594 Query 84360 TGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGA 84419 ||||| ||| || |||| ||| ||||| |||||| || || ||||||||||| || Sbjct 694593 TGCATAGCACCAAACAGAGAACCATAGAATATACCAGCTACACCTAACATGTGAAATGGG 694534 Query 84420 TGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATA 84479 |||||||||||||| | | |||| ||| |||| |||| ||||||| | | || |||| Sbjct 694533 TGCATAAGGATGTTGTCCTAAGCCTAGAATACAATCATGAAGTTGAAAG-TACTAAGATC 694475 Query 84480 CCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCA 84539 || | ||||| ||||||||||| ||||| || | ||||| | | ||| |||| | Sbjct 694474 CCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATTGGATAGATCAAGAAGACAGTA 694415 Query 84540 GATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGA 84599 | || || | || || | | || |||||| | ||||| ||| ||||||| |||||| Sbjct 694414 GTAGCATCTACCACAAGACCTTAATATGCAACAGAAATCCAAGGATGCATACCCAGACGA 694355 >seq199 Length=1013994 Score = 131 bits (144), Expect = 2e-25 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 83973 GCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCG 84032 || || || || |||||||| || || |||||||| ||||| |||||||||||||| Sbjct 992388 GCTAGGTCTAAAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 992447 Query 84033 GCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTC 84092 || || || | | ||| ||||| | || | ||||| ||| || || || | | Sbjct 992448 GCRCGGTTGATAATATCAGCCCAAGAGTTAATTACACGACCTTGACTGTCAACTACAGAT 992507 Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || ||||| | || ||||| || || || ||||||||||| | ||| | ||||| |||| Sbjct 992508 TGGTTGAAATYGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTAAAC 992567 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGA 84200 || || || || || ||||||||||| | ||| || | | ||||||| Sbjct 992568 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAACGTAAAGAACGA 992615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571247871265240