Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 172 6e-38 seq257 109 6e-19 seq27 109 6e-19 >seq6 Length=10738081 Score = 172 bits (190), Expect = 6e-38 Identities = 581/895 (65%), Gaps = 15/895 (2%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| ||| |||| | ||| ||||||||||| || || || | ||| || || | Sbjct 5634112 TTTCTGATAGTCGCCAACCCGTTTCTCAAAGAAATTGGTCTTCCCTTGTAAAGAAATCAA 5634053 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||| || || | ||||| ||||| ||| | |||| || || || Sbjct 5634052 CTCCATCCAATCAAAAGGGTTCTGAACATTGTATATCTTTCCGTATCCCAAGGCTCCAAG 5633993 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | ||||| || || || | || || |||||| |||| |||||||| | ||| Sbjct 5633992 CAACCTATCGGCCACGAACTCGATGTACTGACTCATCAGATCAGCGTTCATTCCCACTAA 5633933 Query 18849 TTTAACAGGTAGTGCATCTG-TAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | |||| ||| || || ||| | | | | | || | || || || | | | Sbjct 5633932 CGCACATGGTAATGCGTCGCATACGAACTCCCTCT-CGATTTCCACCGCTTCCGCAACGA 5633874 Query 18908 TAGATACAACTCTATCTTCATTAGGAG---GGTATAGAAGATGTTTAAACATCAAACATG 18964 | | |||| |||||| | | | | | || | | | | || || | Sbjct 5633873 TTCCTTTCACTCGCTCTTCACTCAGCTTCTGCTTCAAAAACTCGT---ATAGCAGGCAAG 5633817 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 | ||||| || || | ||||||||||| |||||| || || ||||||||||| || | Sbjct 5633816 CGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAAAATGTTAACCCCG 5633757 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATA 19083 |||||| || | ||| || ||||||||||| | ||||| | | ||||| |||||||| Sbjct 5633756 GCATCAACCCGCGTTTCTTCAACCAGAATATCG-CGCAAAAGCTGCCAGAGAAGAATATC 5633698 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143 || || || || || || ||||| | ||| | | || || | | |||| Sbjct 5633697 CCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAA---AGATTCCGAACTGGTAATC 5633641 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 || |||| ||| | ||| ||||||| || || || || ||||| || | | ||| Sbjct 5633640 CAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGTGAAAC 5633581 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 ||| | ||| ||| ||| || | || | |||| ||| | |||||||| || Sbjct 5633580 AGACGGTTTTTCTCGGCTGCATCCTTGATGTAGGATTCTAACAAGAGGCTGTACATCTCC 5633521 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 ||||| || || || || || || || || ||||| || | || || | | || Sbjct 5633520 GAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCTCGGAATTTTGA 5633461 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| | || | | ||| ||||| |||| || |||||| ||| || || Sbjct 5633460 ACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAATACCATCAGAAGCAGCGAAG 5633401 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATC-TGAGGTTAATGTATTCCAATCATT 19442 || || | ||| | |||| || ||||| || | ||| |||| | | ||| ||| Sbjct 5633400 AAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGA-GTTAGATTTTCCCAGTCACG 5633342 Query 19443 AATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 | ||||| || | || |||||||| | ||||| ||||| ||||| || || || || Sbjct 5633341 TAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTA 5633282 Query 19503 CATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTT 19557 ||| | ||| || ||| | ||||| || || || ||| ||||||| | |||| Sbjct 5633281 CATTTCCCAGATTTCAGGGTATTGAATTGGGAACATACAGAATCTATCTGGATTT 5633227 >seq257 Length=623575 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||| ||||| | ||| | ||||| | || | || | | |||||| ||||||||| Sbjct 424936 CCTCCCTGATCAACATAGCGAGCAGTGTCATTGAAGACACGCAGCATTGGAACAATACCA 424877 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || |||| ||||| | | | |||| |||||| || ||| Sbjct 424876 TTGGATGTCCCATTTGTACCACAAATGTAACTGCTAGTGGCTCGAATATTATGAACAGAA 424817 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || ||||| || ||| || | ||||||| || | ||||||||| ||| Sbjct 424816 ACACCAATTCCACCAGCAGATTTGCTGATCACAGCACACTCCTTCAAGGTATCATATATT 424757 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 424756 CCCTCGATACTATCATCTTTCAT 424734 >seq27 Length=6178458 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||| | ||| | || | | |||||||||||||||| Sbjct 1665525 CCTCCTTGATCAACATAGCGTGCAGTGTCATTAAACACACGCAGCATTGGGACAATACCA 1665466 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || |||||| || | | | || | |||||| || ||| Sbjct 1665465 TTGGATGTCCCATTTGTACCACGAATATAGCTACTAGTGGCACGAATATTATGAACAGAA 1665406 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | |||||| || | ||||||||| ||| Sbjct 1665405 ACACCAATTCCTCCAGCTGATTTGCTGATCACAGCACATTCCTTCAAGGTATCATATATT 1665346 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 1665345 CCTTCAATACTATCATCTTTCAT 1665323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562083484024920