Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq3603 484 2e-132 seq199 140 1e-28 seq74 93.3 1e-14 >seq3603 Length=163330 Score = 484 bits (536), Expect = 2e-132 Identities = 705/987 (71%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | ||||||||||| || | Sbjct 1446 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1387 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| |||||||||| || || || Sbjct 1386 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 1328 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || ||||| || ||||| || || || | || |||||||| Sbjct 1327 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1268 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | | || | ||| || ||||| | || ||||| ||||| Sbjct 1267 TATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCGAT 1208 Query 26041 CTGGGAAGCTGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 ||||||||| |||| | | || || ||| |||||||||| || || ||| |||| ||| Sbjct 1207 CTGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 1149 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | | ||||||||| | || ||||| || || | | |||||||| || | Sbjct 1148 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAATGGGAACTTAGTTTCC 1089 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219 | || || ||| | || ||||| |||||||||| |||| || | | || ||| | Sbjct 1088 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1029 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | || ||||| | || || | || ||||| || || |||||| |||||||| || | Sbjct 1028 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTCTAGGAA 969 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 ||||||||||||| ||||| ||| | |||||||| || || || || || || ||||||| Sbjct 968 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 909 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 |||| || ||| ||||| ||||| || ||||| || | || ||| ||||||||| | Sbjct 908 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 849 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCA--GAAACGACAGAGGAAGTCTCACAGAATTA 26457 | ||||| |||| || ||| | || ||||| || || | | || ||| | Sbjct 848 GTTCCTTGGTAACTT-CTAGTTTAAT-CAGGGAAACCACTGAAAATGAATCTGCTAATGA 791 Query 26458 TGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 26517 || || | || || ||||| ||||| || |||||||| || ||||| || || || || Sbjct 790 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTT 731 Query 26518 TGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCT 26577 ||| |||| || || || ||||| ||||| || || |||||| | |||||||| || Sbjct 730 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCT 671 Query 26578 TGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATT 26637 ||| ||||||| || || || || ||| | || || | |||||| |||| ||||| || Sbjct 670 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACCATGGCTTT 611 Query 26638 TAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACC 26697 |||||||||||||| || || ||||| || ||||| || | | || |||| Sbjct 610 CAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGTGTAATTAA 551 Query 26698 TACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAA 26757 || ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||| Sbjct 550 CACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 491 Query 26758 TGCTCATAACTTTCCACTTGACTTAGC 26784 |||||| ||||| || || ||| |||| Sbjct 490 TGCTCACAACTTCCCTCTAGACCTAGC 464 >seq199 Length=1013994 Score = 140 bits (154), Expect = 1e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26558 CGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATG 26617 |||||| | | |||||| || ||| ||||||| || || || || ||| | || || | Sbjct 992614 CGTTCTTTACGTTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTA 992555 Query 26618 GGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGA- 26676 |||||| |||| ||||| || |||||||||||||| | || ||||| || ||||| || Sbjct 992554 GGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGAC 992495 Query 26677 TGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTT 26736 || || | | | || || | ||||||||| | | ||||| |||||||| || | Sbjct 992494 AGTCAAGGTCGTGTAATTAACT-CTTGGGCTGATATTATCAACCGYGCTAACCTTGGTAT 992436 Query 26737 TGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| || ||||||||||| ||||| || | ||| |||| Sbjct 992435 GGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTTTAGACCTAGC 992388 >seq74 Length=3028681 Score = 93.3 bits (102), Expect = 1e-14 Identities = 127/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | ||||| | || ||||| || || |||||| |||||| | || ||| Sbjct 694419 GTCTTCTTGATCTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGGATC 694478 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 | | ||||||| ||||| ||| | |||||| | || | | || || || ||||||||| Sbjct 694479 T-TAGTACTTTCAACTTCATGATTGTATTCTAGGCTTAGGACAACATCCTTATGCACCCA 694537 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCA 26397 || || ||| ||||| ||||| | ||| ||| |||| || | ||||||||| Sbjct 694538 TTTCACATGTTAGGTGTAGCTGGTATATTCTATGGTTCTCTGTTTGGTGCTATGCA 694593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146720122219272