Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq3603 585 8e-163 seq74 145 2e-30 seq199 127 6e-25 >seq3603 Length=163330 Score = 585 bits (648), Expect = 8e-163 Identities = 727/993 (73%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct 455 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 514 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || |||||||| | ||| ||||||||||| | || | || | ||| Sbjct 515 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCA 574 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || || ||||| || || || || || || |||||||| ||| || || | | Sbjct 575 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAA 634 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 || |||| ||| || | || ||||||||||| ||||||||||||||| || | Sbjct 635 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAA 694 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 695 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 754 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 ||||| || ||||| ||||| |||||| | || || | || ||||||| |||| Sbjct 755 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTG 814 Query 36324 GTTTCAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 36382 ||||| | || ||| || | || |||| || ||||||||| ||||| | || Sbjct 815 GTTTCCCTGATTAAACTAGAAGTTACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCC 873 Query 36383 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGC 36442 |||||||| || || ||||| | ||| || || || ||||||||||| ||||| || || Sbjct 874 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGC 933 Query 36443 CTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAA 36502 ||| || |||| ||| || |||||||| || || || || |||||||||||||||||||| Sbjct 934 CTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAGAA 993 Query 36503 ACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGA 36562 || ||||| |||| ||||||| ||||| |||||| || ||||||||||| ||||| Sbjct 994 GCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGA 1053 Query 36563 ATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 36622 ||| || ||| ||||| || | |||||| || | ||||||||||||||| || || Sbjct 1054 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGACC 1113 Query 36623 CAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 36682 || |||| | | ||||| | ||||| | ||||| |||| ||| || || || || Sbjct 1114 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATT 1173 Query 36683 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 36742 |||||||| || || | || ||| ||||||||||| || || ||||| | |||||| || Sbjct 1174 GTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGATAAAAGTGCAAACCGATAGC 1233 Query 36743 GTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGA 36802 || | || | || || |||||||| || ||||||||||| |||| | || || Sbjct 1234 TGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGACCCAGA 1293 Query 36803 GACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAA 36862 ||||| |||||||||||||| ||||| || ||||| ||||||| || ||||| | ||| Sbjct 1294 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAA 1353 Query 36863 TGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAG 36922 | | | ||| || || | | ||||||||| | || || ||||| || | || || Sbjct 1354 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAG 1413 Query 36923 GCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 ||||| | || || || | ||||| ||| || Sbjct 1414 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1446 >seq74 Length=3028681 Score = 145 bits (160), Expect = 2e-30 Identities = 281/409 (69%), Gaps = 7/409 (2%) Strand=Plus/Minus Query 36203 ATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 36262 ||| || || |||||||| |||||||| ||| ||||| || ||||| | | ||||| Sbjct 694750 ATTGTTGAAACTAGCATATTGGAAGATCAGTTCGCCAAAATAACCATGGGTGGTTACAAT 694691 Query 36263 GTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGT 36322 ||||| || |||| || | |||| ||| || | || | | | | | || Sbjct 694690 ATTATAAGTTTCTTTCCCTAAACTGAATCCATAACCTTCATTAACAAAATAATTTTCGGT 694631 Query 36323 TGTTTCAC-GAATAAGTGAGGAAGTAAC--AAGACTTCCGTGCATAGCAGCGAATAAAGC 36379 ||||| | || ||| || |||| || | || | ||||||||| | || | || Sbjct 694630 GGTTTCCCTGATTAAAATAG-AAGTTACCGAGGAA--CAATGCATAGCACCAAACAGAGA 694574 Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439 ||| ||||| || || ||||| | ||| || || || ||||||||||| |||| | Sbjct 694573 ACCATAGAATATACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTCCTA 694514 Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499 |||| || |||| ||| || |||||||| | | | || || | ||||||||||||||| Sbjct 694513 AGCCTAGAATACAATCATGAAGTTGAAAGTAC-TAAGATCCCTAAAGGCATACCATCAGA 694455 Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559 ||| || ||||| |||| || |||| ||||| |||| | || || | ||| | | Sbjct 694454 GAAGCTTCCTTGACCAATTGGATAGATCAAGAAGACAGTAGTAGCATCTACCACAAGACC 694395 Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGT 36608 | |||| || ||| | ||||| || |||||| || | | |||||||| Sbjct 694394 TTAATATGCAACAGAAATCCAAGGATGCATACCCAGACGAAAACTAAGT 694346 >seq199 Length=1013994 Score = 127 bits (140), Expect = 6e-25 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| ||| |||||||| | ||||||||||| || ||||| ||||||||||||||||| Sbjct 992379 TCAACAGTAGCTAGGTCTAAAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 992438 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || || ||||| | ||| |||||||||| | || | || | ||| Sbjct 992439 CCAAGGTTAGCRCGGTTGATAATATCAGCCCAAGAGTTAATTACACGACCTTGACTGTCA 992498 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || || ||||| | || || || || || |||||||| ||| || || | | Sbjct 992499 ACTACAGATTGGTTGAAATYGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAA 992558 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 36194 || |||| ||| || | || ||||||||||| ||||||||| ||||| Sbjct 992559 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAACGTAAA 992609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150447962714462