Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq3603 614 2e-171 seq74 158 4e-34 seq199 150 5e-32 >seq3603 Length=163330 Score = 614 bits (680), Expect = 2e-171 Identities = 736/995 (74%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||||| Sbjct 455 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 514 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| |||||||| | | ||| ||||||||| || | | ||| | |||| Sbjct 515 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCA 574 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || || || || ||||| || || || || || || |||||||| ||| ||| || | | Sbjct 575 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAA 634 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | |||| ||| || | || || ||||||| ||| ||||||||||||||| ||| | Sbjct 635 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAA 694 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 695 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 754 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||||| |||||||||||||| |||||| | || || | || ||| | |||| Sbjct 755 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTG 814 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 ||||| | || | |||||| || | |||||||||||| ||| | | || Sbjct 815 GTTTCCCTGATTAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 874 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||||||| ||||| ||||| | |||||| || || ||||||||||| ||||| || ||| Sbjct 875 CCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 934 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 |||||||| | ||| ||||| |||||||||||||| || ||||||||||||||| ||| Sbjct 935 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAGAAG 994 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGA 5784 ||||| || || | ||||| | || || || | |||| || || ||||| || ||||| Sbjct 995 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGA 1053 Query 5785 ATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCC 5844 |||||| || |||||| || ||||| || | | | ||||||||||||||| || || Sbjct 1054 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGACC 1113 Query 5845 CAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATT 5904 || |||| || | ||||| | |||||| | || | |||| || || || ||||| Sbjct 1114 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATT 1173 Query 5905 GTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATT 5962 ||| | ||||||||| | ||| || ||||||||||| ||||| ||||| || || || Sbjct 1174 GTATAACCATTCATCAACGGAT--GCCGCTTCCCAGATCGGATAAAAGTGCAAACCGATA 1231 Query 5963 GCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCT 6022 || || | || | || ||| || || || || ||||||||||| |||||||| || Sbjct 1232 GCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGACCCA 1291 Query 6023 GCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATA 6082 | || |||||||| || || || || || ||||| || ||||| | ||| || | ||| Sbjct 1292 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATA 1351 Query 6083 AATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAG 6142 ||| ||| ||||||||| || | | || ||||| || ||||| ||||| || | || Sbjct 1352 AATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAA 1411 Query 6143 AGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||| | ||||| || | ||||| |||||| Sbjct 1412 AGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1446 >seq74 Length=3028681 Score = 158 bits (174), Expect = 4e-34 Identities = 294/426 (69%), Gaps = 7/426 (2%) Strand=Plus/Minus Query 5408 AAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAG 5467 ||||||||| | | |||||| || |||||||| |||||||| ||| ||||| || Sbjct 694767 AAATGTAAAGAATGAGAATTGTTGAAACTAGCATATTGGAAGATCAGTTCGCCAAAATAA 694708 Query 5468 CCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTC 5527 ||||| | | ||||| ||||| ||||||| | || | |||| ||| || | || Sbjct 694707 CCATGGGTGGTTACAATATTATAAGTTTCTTTCCCTAAACTGAATCCATAACCTTCATTA 694648 Query 5528 TGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAAC--AAGACTTCCATGCA 5585 | || | | || ||||| | || | |||||| || | || | ||||| Sbjct 694647 ACAAAATAATTTTCGGTGGTTTCCCTGATTAAAATAGAAGTTACCGAGGAA--CAATGCA 694590 Query 5586 TAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCA 5645 ||||| | |||| || ||| ||||| ||||| ||||| | |||||| || || |||| Sbjct 694589 TAGCACCAAACAGAGAACCATAGAATATACCAGCTACACCTAACATGTGAAATGGGTGCA 694530 Query 5646 TAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAA 5705 ||||||| |||| | |||| |||||| | ||| ||||| ||||||| | |||| || | Sbjct 694529 TAAGGATGTTGTCCTAAGCCTAGAATACAATCATGAAGTTGAAAGTACTA-AGATCCCTA 694471 Query 5706 GAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAG 5764 ||||||||||||| ||| ||||| || || | || || | || || || | |||| Sbjct 694470 AAGGCATACCATCAGAGAAGCTTCCTTGACCAATTGGATAGATCAAGAAGACAGTAGTA- 694412 Query 5765 GCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAA 5824 || | | || | || ||||||| || ||||||| || |||| || | | || Sbjct 694411 GCATCTACCACAAGACCTTAATATGCAACAGAAATCCAAGGATGCATACCCAGACGAAAA 694352 Query 5825 CTAAGT 5830 |||||| Sbjct 694351 CTAAGT 694346 >seq199 Length=1013994 Score = 150 bits (166), Expect = 5e-32 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| ||| ||||| || | ||||||||||||||||| ||||| ||||| ||||||||| Sbjct 992379 TCAACAGTAGCTAGGTCTAAAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 992438 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| || ||||| | | ||| ||||||| | || | | ||| | |||| Sbjct 992439 CCAAGGTTAGCRCGGTTGATAATATCAGCCCAAGAGTTAATTACACGACCTTGACTGTCA 992498 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || || || || ||||| | || || || || || |||||||| ||| ||| || | | Sbjct 992499 ACTACAGATTGGTTGAAATYGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAA 992558 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAA 5416 | |||| ||| || | || || ||||||| ||| ||||||||| ||||| Sbjct 992559 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAACGTAAA 992609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152643068791458