Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq3603 571 2e-158 seq74 143 8e-30 seq199 127 6e-25 >seq3603 Length=163330 Score = 571 bits (632), Expect = 2e-158 Identities = 724/993 (73%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| ||| |||||||||||||| || ||||| ||||||||||||||||| Sbjct 455 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 514 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | || |||||||| | ||| ||||||||||| | || | || | ||| Sbjct 515 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCA 574 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || || ||||| || || || || || || |||||||| ||| || || | | Sbjct 575 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAA 634 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 || |||| ||| || | || ||||||||||| ||||||||||||||| ||| | Sbjct 635 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAA 694 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 695 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 754 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 ||||| || ||||| ||||| |||||| | || || | || ||||||| |||| Sbjct 755 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTG 814 Query 25804 GTTTCAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 25862 ||||| | || ||| || | || |||| || ||||||||| ||||| | || Sbjct 815 GTTTCCCTGATTAAACTAGAAGTTACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCC 873 Query 25863 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGC 25922 |||||||| || || ||||| | ||| || || || ||||||||||| ||||| || || Sbjct 874 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGC 933 Query 25923 CTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAA 25982 ||| || |||| ||| || |||||||| || || || || |||||||||||||||||||| Sbjct 934 CTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAGAA 993 Query 25983 ACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGA 26042 || ||||| |||| ||||||| ||||| |||||| || ||||||||||| ||||| Sbjct 994 GCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGA 1053 Query 26043 ATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCC 26102 ||| || ||| ||||| || | ||| || || | ||||||||||||||| || || Sbjct 1054 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGACC 1113 Query 26103 CAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTT 26162 || |||| | | || | | ||||| | ||||| |||| ||| || ||||| || Sbjct 1114 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATT 1173 Query 26163 ATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 26222 || ||||| || || | || ||| ||||||||||| || || ||||| | |||||| || Sbjct 1174 GTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGATAAAAGTGCAAACCGATAGC 1233 Query 26223 GTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGA 26282 ||| | || | || || || ||||| || ||||||||||| |||| | || || Sbjct 1234 TGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGACCCAGA 1293 Query 26283 GACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAA 26342 ||||| |||||||||||||| ||||| || ||||| ||||||| || ||||| | ||| Sbjct 1294 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAA 1353 Query 26343 TGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAG 26402 | | | ||| || || | | ||||||||| | || || ||||| || | || || Sbjct 1354 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAG 1413 Query 26403 GCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 ||||| | || || || | ||||| ||| || Sbjct 1414 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1446 >seq74 Length=3028681 Score = 143 bits (158), Expect = 8e-30 Identities = 291/426 (68%), Gaps = 7/426 (2%) Strand=Plus/Minus Query 25666 AAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAG 25725 ||||||||| | | ||| || || |||||||| |||||||| ||| ||||| || Sbjct 694767 AAATGTAAAGAATGAGAATTGTTGAAACTAGCATATTGGAAGATCAGTTCGCCAAAATAA 694708 Query 25726 CCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTC 25785 ||||| | | ||||| ||||| || |||| || | |||| ||| || | || Sbjct 694707 CCATGGGTGGTTACAATATTATAAGTTTCTTTCCCTAAACTGAATCCATAACCTTCATTA 694648 Query 25786 TGAGATTCAAGCCCAGTTGTTTCAC-GAATAAGTGAGGAAGTAAC--AAGACTTCCGTGC 25842 | | | | | || ||||| | || ||| || |||| || | || | ||| Sbjct 694647 ACAAAATAATTTTCGGTGGTTTCCCTGATTAAAATAG-AAGTTACCGAGGAA--CAATGC 694591 Query 25843 ATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGC 25902 |||||| | || | || ||| ||||| || || ||||| | ||| || || || ||| Sbjct 694590 ATAGCACCAAACAGAGAACCATAGAATATACCAGCTACACCTAACATGTGAAATGGGTGC 694531 Query 25903 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 25962 |||||||| |||| | |||| || |||| ||| || |||||||| | | | || || Sbjct 694530 ATAAGGATGTTGTCCTAAGCCTAGAATACAATCATGAAGTTGAAAGTAC-TAAGATCCCT 694472 Query 25963 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAAT 26022 | |||||||||||||||||| || ||||| |||| || |||| ||||| |||| | Sbjct 694471 AAAGGCATACCATCAGAGAAGCTTCCTTGACCAATTGGATAGATCAAGAAGACAGTAGTA 694412 Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082 || || | ||| | || |||| || ||| | ||||| || ||| || || | | || Sbjct 694411 GCATCTACCACAAGACCTTAATATGCAACAGAAATCCAAGGATGCATACCCAGACGAAAA 694352 Query 26083 CTAAGT 26088 |||||| Sbjct 694351 CTAAGT 694346 >seq199 Length=1013994 Score = 127 bits (140), Expect = 6e-25 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| ||| | |||||||||||| || ||||| ||||||||||||||||| Sbjct 992379 TCAACAGTAGCTAGGTCTAAAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 992438 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | || || ||||| | ||| |||||||||| | || | || | ||| Sbjct 992439 CCAAGGTTAGCRCGGTTGATAATATCAGCCCAAGAGTTAATTACACGACCTTGACTGTCA 992498 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || || ||||| | || || || || || |||||||| ||| || || | | Sbjct 992499 ACTACAGATTGGTTGAAATYGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAA 992558 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 25674 || |||| ||| || | || ||||||||||| ||||||||| ||||| Sbjct 992559 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAACGTAAA 992609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151987096858828