Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq97 113 3e-20 seq37 107 1e-18 seq34 86.0 5e-12 seq30 86.0 5e-12 seq17 86.0 5e-12 seq6 86.0 5e-12 seq1 84.2 2e-11 >seq97 Length=2389559 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | ||||||||| | || || || || || |||||||| | Sbjct 873046 CCACCACGTAGACGAAGCACCAAATGCAATGTAGATTCCTTCTGTATGTTGTAATCGGCC 873105 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || ||||||||||| || ||||| || || | ||| ||||| | ||| Sbjct 873106 AAAGTGCGTCCATCTTCCAACTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCAGGTGGA 873165 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||||| || ||| | | | | ||||| ||| ||| Sbjct 873166 ATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCTGAGCTCTCTACC 873225 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || |||||||| || || |||||||||||||| Sbjct 873226 TCCAGAGTAATTGTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCAT 873272 >seq37 Length=4974474 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||| |||||||||||||||| || ||| | || || Sbjct 2662731 ACCAAGTGGAGGGTGGATTCTTTCTGAATATTGTAATCAGCCAGTGTTCTTCCATCTTCT 2662790 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| || || ||||| || || | |||| |||||||| || Sbjct 2662791 AGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGAAGGAATTCCCTCCTTATCCTGG 2662850 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||||||| | | || || || |||||| || | ||||| ||||| Sbjct 2662851 ATCTTTGCTTTTACATTGTCTATAGTATCAGAACTCTCCACTTCTAAAGTAATGGTTTTC 2662910 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| ||||| ||||||||||| || Sbjct 2662911 CCAGTCAGTGTTTTGACAAAAATCTGAAT 2662939 >seq34 Length=5171523 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9088 ATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAAC 9147 |||||||| || |||| || || ||||| |||| || | |||||| || ||||| Sbjct 5062857 ATTAATTGGGCTATCCGATCGCCGGGCTTCACTTCAAAATCAGCGTCGGAGTGGTTGAAG 5062798 Query 9148 AGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATG 9207 || ||||| || || ||||||||||| |||| || |||||||||||||| || || Sbjct 5062797 AGAACCACCCCTACTGGTCCCCTGTAATCAGCATCTATGACACCAGCACCCACATCAATC 5062738 Query 9208 AAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 | ||||| ||| || || || || || || Sbjct 5062737 GAATGCTTCCACGCAAGACCCGATCGCGGTGC 5062706 >seq30 Length=5940761 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | || | ||| || ||| |||||| ||||| ||||| || | Sbjct 3345474 CCGCCACGAAGACGGAGGACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCCGCA 3345533 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGG 48658 || | ||| | || || | ||||| |||||||| || || | ||| ||||| | |||| Sbjct 3345534 AGGGTGCGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCAGGTGGG 3345593 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | ||||| ||||| |||||| || ||| | | | || || |||||| Sbjct 3345594 ATC-CCCTCTTTGTCCTGAATCTTAGCCTTAACATTGTCTATGGTATCAGAGCTCTCCAC 3345652 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || ||||| || || ||||| || || || || ||||||||| Sbjct 3345653 CTCCAGTGTGATCGTCTTCCCTGTCAAGGTCTTCACGAAGATCTGCATC 3345701 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| | ||| || ||||| || ||||| |||| | | ||| Sbjct 3345711 AGACGGAGCACCAGATGCAATGTGGATTCCTTTTGTATGTTGTAGTCAGCCAAGGTGCGA 3345770 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTC 48667 | || |||| |||||| || ||||||||||| | ||| || || |||||| | ||||| Sbjct 3345771 CCATCCTCCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGGTCTGGTGGGATC-CCCTC 3345829 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||||| ||||||| || || | | | ||||| ||| ||||| | || Sbjct 3345830 TTTGTCCTGAATCTTTGCCTTCACGTTGTCAATGGTATCTGAGCTCTCAACCTCTAGAGT 3345889 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| || || |||||||||||||| Sbjct 3345890 GATGGTTTTCCCGGTCAGGGTCTTCACAAAAATCTGCAT 3345928 >seq17 Length=7869039 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||||||||| | || | || | || || | |||||| || ||||| Sbjct 3557205 TCCTTCTGAATATTGTAATCTGCAAGGGTCCGGCCATCCTCAAGCTGCTTTCCAGCAAAG 3557264 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| || |||| |||| ||||||||||| ||||||| || ||| Sbjct 3557265 ATGAGCCTCTGCTGGTCCGGTGGAATTCCCTCCTTGTCTTGAATCTTTGCCTTGACATTG 3557324 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| ||| || || | ||| || || ||||| |||| ||| || || Sbjct 3557325 TCAATGGTGTCTGAGCTCTCAACTTCAAGCGTGATAGTCTTTCCAGTCAGAGTCTTAACG 3557384 Query 48756 AAAATCTGCATC 48767 || ||||||||| Sbjct 3557385 AAGATCTGCATC 3557396 >seq6 Length=10738081 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | |||| ||| ||||| ||||| || ||||||||||| | Sbjct 270638 CCTCCTCTGAGACGAAGAACCAGATGAAGCGTCGATTCTTTCTGGATATTGTAATCGGCC 270697 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| || | |||||| || || || || || || || ||||| | || Sbjct 270698 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCCGCGAAGATAAGGCGTTGCTGATCGGGAGGG 270757 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||| ||||| ||||| || ||| | | | ||||| | ||| ||| Sbjct 270758 ATGCCCTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAGGACTCAACC 270817 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | |||||||| || |||||||| Sbjct 270818 TCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTTACGAAGATCTGCAT 270864 >seq1 Length=14325340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| |||| || |||| || | || || ||||| || |||||||| | Sbjct 9211666 CCGCCCCTAAGCCTCAGGACCAGGTGCAAGGTCGATTCCTTTTGGATGTTGTAATCTGCA 9211725 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || ||||| || ||||| ||||| || |||| |||||||| | |||| Sbjct 9211726 AGAGTACGGCCATCTTCCAATTGTTTACCAGCAAAAATTAGTCTTTGTTGATCAGGGGGA 9211785 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 9211786 ATGCCCTCCTTGTC 9211799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380920872434769