Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq3603 641 4e-179 seq199 150 2e-31 >seq3603 Length=163330 Score = 641 bits (710), Expect = 4e-179 Identities = 738/992 (74%), Gaps = 6/992 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||||||||| |||||| Sbjct 1443 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATG 1384 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| ||| | | ||| | || || || ||||| |||||||| || |||||| Sbjct 1383 ATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCA 1324 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || || || ||||| ||||| || Sbjct 1323 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATT 1264 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 ||||||||||| | |||||| ||| ||||| ||| | ||||| ||||| |||||| Sbjct 1263 ATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCGATCTGG 1204 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| | ||||||| ||||| || |||||||| |||| |||| | || | Sbjct 1203 GAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTA 1144 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | | ||| |||||| | ||||||||| || ||| | Sbjct 1143 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAATGGGAACTTAGTTTCCGTCTG 1084 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 ||||||||||||||||| ||||||||| || || || || | || || ||||| Sbjct 1083 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1024 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 |||||| |||| || | |||||||| |||||||| | |||||||| || || ||| Sbjct 1023 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTCTAGGAATCTCT 964 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| |||| |||| | || ||||| || |||||||||||||| |||||||| || Sbjct 963 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 904 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || ||||||||||| || || || || ||||||||||| ||||| Sbjct 903 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 844 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || |||||| | | ||||| ||||| ||||| | || || || | ||||| Sbjct 843 TTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAATCTGCTAATGAAGGTTAC 784 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | ||||| ||||| ||||| ||||| || || || ||||||||||| || ||||| || Sbjct 783 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 724 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 ||||||||||| ||||| ||||||||| || ||||| | || |||||||| ||||| Sbjct 723 TTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCT 664 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | ||||| || | |||||||| ||||| | ||| | || ||||| |||||||| Sbjct 663 TGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTA 604 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGAC---GCAGGTGGTAAAGTGATTCCTACT 163398 || |||||||| ||||||||||| || |||||| |||| || || ||| ||| Sbjct 603 AATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGT---GTAATTAACACT 547 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| ||||| | ||| | || |||||||||||||||||||| || ||||||||| Sbjct 546 TGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 487 Query 163459 CACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 ||||||||||| || ||||| ||||||| ||| Sbjct 486 CACAACTTCCCTCTAGACCTAGCTGCTGTTGA 455 >seq199 Length=1013994 Score = 150 bits (166), Expect = 2e-31 Identities = 170/227 (75%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 163267 TTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACT 163326 |||||||| ||||| | ||||| || | |||||||| ||||| | ||| | || Sbjct 992602 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACC 992543 Query 163327 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGT 163383 ||||| |||||||| || |||||| | ||||||||||| || |||||| |||| || Sbjct 992542 ATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGT 992483 Query 163384 AAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATG 163443 || ||| ||||||| ||||| | ||| | || |||||||||||||||||| Sbjct 992482 ---GTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATGGAAGTTATG 992426 Query 163444 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 || || |||||||||||||||||||| | ||||| ||| ||| ||| Sbjct 992425 CATGAACGTAATGCTCACAACTTCCCTTTAGACCTAGCTACTGTTGA 992379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553059890443320