Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq8 113 8e-20 seq6 105 1e-17 >seq8 Length=10307871 Score = 113 bits (124), Expect = 8e-20 Identities = 189/271 (70%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||| | ||||| |||||||| ||||| ||||| || || | |||||| Sbjct 4256398 GTACATCTCGGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCACGGGCCTC 4256457 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 | | || ||||| | ||| | | ||| || || || || || || || | Sbjct 4256458 GGAGATTTGGACTTCCTTCATGAACCGAGC-AGCGAGGTTTTCGAGAACAATACCGTCAG 4256516 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 ||||||| |||||||| || ||||| ||| ||| || ||||| ||||| || | Sbjct 4256517 AAGCAGCGAAGAAGGCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTT 4256576 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | | |||| | || || |||||||| ||||||||||||| || | Sbjct 4256577 CCCAGTGACGGAGATCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGG 4256636 Query 48663 CTTTTTTGTACATGCCCCATATGTCCGGATA 48693 |||| |||||||| ||||||| | ||||| Sbjct 4256637 CTTTCTTGTACATTTCCCATATTTGGGGATA 4256667 >seq6 Length=10738081 Score = 105 bits (116), Expect = 1e-17 Identities = 373/578 (65%), Gaps = 15/578 (3%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| || || || | |||||| || ||||| | || | | |||| || Sbjct 5633829 TATAGCAGGCAAGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAA 5633770 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA-GCC 48240 || | || ||||| | ||| | | || | |||||| || || || |||| ||| Sbjct 5633769 AATGTTAACCCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGC-GCAAAAGCTGCC 5633711 Query 48241 AGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GT 48299 ||||||||| || ||||| || ||||| ||| || | || ||||||| | | Sbjct 5633710 AGAGAAGAATATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGA 5633651 Query 48300 TCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 || || ||||| ||| | ||| | || ||||| | | ||| || || |||| Sbjct 5633650 ACTGGTA----ATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCT 5633595 Query 48360 CTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGG----TAGTGAGC 48415 | || || | || || || ||| |||| ||| | |||| || || Sbjct 5633594 CAATTGCGTGAAACAGACGGTTTTTCTCGGCTGCATCCTTGATGTAGGATTCTAACAAGA 5633535 Query 48416 AGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCC 48475 ||| ||||||||| || || | ||||| || || || ||||| ||||||||||| Sbjct 5633534 GGCT----GTACATCTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCA 5633479 Query 48476 CTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATC 48535 | ||||| | || |||||| | ||| | ||| || || | || || Sbjct 5633478 CGAGCCTCGGAATTTTGAACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAATA 5633419 Query 48536 CCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTG 48595 ||||| |||||||| |||||||| || ||| | ||| ||| || |||| ||| || Sbjct 5633418 CCATCAGAAGCAGCGAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTT 5633359 Query 48596 AGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGAC 48655 ||| | |||| | ||| |||| | ||||| |||||||| | |||||||| || Sbjct 5633358 AGATTTTCCCAGTCACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAG 5633299 Query 48656 GCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || || || |||||||| |||| || || || || Sbjct 5633298 GCCTCGGCCTTCTTGTACATTTCCCAGATTTCAGGGTA 5633261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931490846091520