Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq65 104 2e-17 seq97 93.3 4e-14 seq22 89.7 4e-13 seq31 87.8 2e-12 seq1 84.2 2e-11 seq37 82.4 6e-11 >seq65 Length=3230173 Score = 104 bits (114), Expect = 2e-17 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || |||| || ||||||||||| || || ||| Sbjct 2676799 AATGCAAATCTTTGTCAAGACTCTAACCGGGAAAACCATTACTYTGGAGGTTGAGAGTTC 2676740 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| || ||| ||||| || ||| | || ||||| Sbjct 2676739 TGATACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCTGATCA 2676680 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||||||||||| || || ||| | |||||| || || |||| || || || Sbjct 2676679 GCAGAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGTAGGACACTGGCTGAYTAYAA 2676620 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| || ||||| ||||| ||| Sbjct 2676619 CATTCAGAAGGAATCCACTCTCCAC 2676595 >seq97 Length=2389559 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || || || || |||| ||| ||| Sbjct 873956 ATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACTATAACTCTCGAAGTGGAGAGTTCT 873897 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| |||||| ||||| |||||| | ||| ||| || Sbjct 873896 GATACAATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCAG 873837 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | |||||||| || || ||| | |||||| ||| |||| ||||| ||| Sbjct 873836 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGGACTTTGGCTGATTACAAC 873777 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||||||||||||||| || ||| Sbjct 873776 ATTCAAAAAGAATCTACACTCCAC 873753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| |||||||| || | || || || ||||| ||| || || || Sbjct 873729 AATGCAAATTTTTGTAAAGACGCTTACTGGAAAGACCATAACCCTTGAGGTTGAGAGCTC 873670 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| ||| | | || |||| ||| ||| ||||| ||||| | ||| ||| || Sbjct 873669 AGATACGATTGATAATGTCAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 873610 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || || | || ||| | || |||| || ||||| Sbjct 873609 GCAGAGGCTGATTTTTGCTGGAAAGCAGCTAGAGGATGGCAGGACCTTGGCTGACTATAA 873550 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| || || |||||| |||| |||| | ||| | |||||||| || Sbjct 873549 CATTCAGAAGGAGTCTACTTTGCATCTGGTTCTTAGACTTCGAGGAGGTAT 873499 >seq22 Length=7127660 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||| |||| || || || ||||| ||| ||| || Sbjct 3801808 ATGCAAATCTTTGTCAAGACACTAACTGGGAAGACGATTACTTTGGAAGTGGAGAGCTCT 3801867 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || ||| ||||| |||||| | || ||||||| Sbjct 3801868 GATACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATACCACCAGATCAA 3801927 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || || |||| ||| | || | || ||||| || Sbjct 3801928 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGAAGGACCCTAGCTGATTACAAT 3801987 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || || || |||||||| ||| |||| Sbjct 3801988 ATCCAGAAGGAGTCTACTCTTCACTTGGT 3802016 >seq31 Length=5807843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/212 (69%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || |||| || |||||||||||| || || || Sbjct 4127517 AATGCAAATCTTTGTCAAGACTCTAACCGGGAAAACCATTACCCTGGAGGTTGAGAGTTT 4127576 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| || ||| ||||| || ||| | || | ||||| Sbjct 4127577 TGATACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCTTGATCA 4127636 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTA--AAACT-----ATGGCCG 28725 ||||||||||||||||| || || ||| | |||||| || | ||| | || | Sbjct 4127637 GCAGAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGTAGGACACTGGCTGACAGCTG 4127696 Query 28726 ATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 | || |||||||| || ||||| ||||| ||| Sbjct 4127697 ACTACAACATTCAGAAGGAATCCACTCTCCAC 4127728 >seq1 Length=14325340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | ||| |||||||| ||||| || ||||| || |||||||||||| Sbjct 9211799 GACAAGGAGGGCATTCCCCCTGATCAACAAAGACTAATTTTTGCTGGTAAACAATTGGAA 9211740 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| ||| | || ||||| ||||| ||||| ||||| || ||||| |||| Sbjct 9211739 GATGGCCGTACTCTTGCAGATTACAACATCCAAAAGGAATCGACCTTGCACCTGGT 9211684 >seq37 Length=4974474 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/205 (69%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| |||||||| || || ||||| || ||||| || ||| || || ||| Sbjct 2663394 AATGCAGATATTTGTTAAGACGTTAACTGGAAAAACAATCACCCTGGAGGTAGAGAGTTC 2663335 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| || ||| ||||| ||||| | || || || Sbjct 2663334 TGATACAATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCA 2663275 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || |||||| | |||||| || | || ||||| || Sbjct 2663274 GCAGAGGCTTATCTTTGCTGGAAAACAACTTGAAGATGGCCGGACATTAGCTGATTA-AA 2663216 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| || || |||||||| ||| Sbjct 2663215 CATTCAGAAGGAGTCTACTCTCCAC 2663191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425386119810537