Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq3603 563 3e-156 seq74 152 2e-32 seq199 123 8e-24 >seq3603 Length=163330 Score = 563 bits (624), Expect = 3e-156 Identities = 722/987 (73%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 463 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 522 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGG 17952 ||| | ||||| | |||||||| || | || | ||| | ||| | || | | Sbjct 523 AGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGA-CTGTCAACTACAG 581 Query 17953 ATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAA 18012 |||||||||| ||||| ||||| || || |||||||| ||| ||| || | || |||| Sbjct 582 ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTAA 641 Query 18013 GCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAA 18072 ||| || | || ||||||||||| | ||||||||||| | | |||||| | Sbjct 642 ACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGA 701 Query 18073 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACG 18132 | |||||||| |||||||| | || ||||| || |||||||| || || |||||||| | Sbjct 702 AACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAG 761 Query 18133 TCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTC 18192 | ||||| ||||| || ||| | || || | || ||| ||| ||||| ||||| | Sbjct 762 TTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTGGTTTCCC 821 Query 18193 TAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 18252 | || | ||||| || | || ||||||||| ||||| | || ||||||| Sbjct 822 TGATTAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATA 881 Query 18253 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATA 18312 | || || ||||| | ||| || || || ||||||||||| ||||| || || ||||||| Sbjct 882 CACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA 941 Query 18313 CGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 18372 | | |||||| ||||||||||| || || |||||||||||||||||||| || |||| Sbjct 942 CAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAGAAGCTTCCTT 1001 Query 18373 GTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGC 18430 | |||| || || | | ||||| || | || | |||||||| || || || ||||| || Sbjct 1002 GACCAATTGGGTAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATGC 1059 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| |||||| || |||||||| || | ||||||||||||||| || |||||||| Sbjct 1060 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGACCCATGTA 1119 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 | || | || | | ||||| | ||||| |||| ||| || || || || ||||| Sbjct 1120 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAA 1179 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||| || || | || ||| ||||||||||| || || ||||| | |||||| || ||| Sbjct 1180 CCATTCATCAACGGATGCCGCTTCCCAGATCGGATAAAAGTGCAAACCGATAGCTGCAGA 1239 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 | || | || || || || || || ||||||||||| |||| | || || ||||| Sbjct 1240 AGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAGG 1299 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 |||||||||||||| || || || ||||||||||||| || ||||| | |||| | | Sbjct 1300 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA 1359 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || |||||| || | | ||||||||| | || || ||||| || | ||| || ||||| Sbjct 1360 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTT 1419 Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||||| ||| || Sbjct 1420 TTCAGTGCTGGTTATCCAGTTACAGAA 1446 >seq74 Length=3028681 Score = 152 bits (168), Expect = 2e-32 Identities = 284/411 (69%), Gaps = 11/411 (3%) Strand=Plus/Minus Query 18065 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 18124 |||||| || |||||||| |||||||| ||| ||||| || ||||| | | ||||| Sbjct 694750 ATTGTTGAAACTAGCATATTGGAAGATCAGTTCGCCAAAATAACCATGGGTGGTTACAAT 694691 Query 18125 ATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184 |||||| || |||| || | ||| ||| || | || | | | | || || Sbjct 694690 ATTATAAGTTTCTTTCCCTAAACTGAATCCATAACCTTCATTAACAAAATAATTTTCGGT 694631 Query 18185 CGTTTCTCTAATAAGTGAGGAAGTAAC--AAGACTTCCGTGCATAGCAGCGAATAAAGCT 18242 ||||| || || | ||||| || | || | ||||||||| | || | || Sbjct 694630 GGTTTCCCTGATTAAAATAGAAGTTACCGAGGAA--CAATGCATAGCACCAAACAGAGAA 694573 Query 18243 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCG 18302 ||| ||||| || || ||||| | ||| || || || ||||||||||| |||| | Sbjct 694572 CCATAGAATATACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTCCTAA 694513 Query 18303 GCTTGGAATACGAACATGAAATTGAAAGTACCGCTA--ATACCAAGAGGCATACCATCAG 18360 || | |||||| | |||||| ||||||||| ||| || || | |||||||||||||| Sbjct 694512 GCCTAGAATACAATCATGAAGTTGAAAGTA---CTAAGATCCCTAAAGGCATACCATCAG 694456 Query 18361 AGAAACTCCCTTGTCCAAAAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGT 18419 |||| || ||||| |||| ||||| | | || || | || | ||| || | || | Sbjct 694455 AGAAGCTTCCTTGACCAATTGGATAGATCAAGAAGACAGTAGTA-GCATCTACCACAAGA 694397 Query 18420 GCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGT 18470 | |||| |||||| ||||||| || ||||||| || | | |||||||| Sbjct 694396 CCTTAATATGCAACAGAAATCCAAGGATGCATACCCAGACGAAAACTAAGT 694346 >seq199 Length=1013994 Score = 123 bits (136), Expect = 8e-24 Identities = 164/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 992387 AGCTAGGTCTAAAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 992446 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGT-ACGACTTGTCCTCCAGCTG-CTACAATG 17951 ||| | ||||| | |||||||| | || | | || | ||| | ||| | || | Sbjct 992447 AGCRCGGTTGATAATATCAGCCCAAG-AGTTAATTACACGACCTTGA-CTGTCAACTACA 992504 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||| | ||| ||||| || || |||||||| ||| ||| || | || ||| Sbjct 992505 GATTGGTTGAAATYGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTA 992564 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA 18054 | ||| || | || ||||||||||| | ||||||| ||| Sbjct 992565 AACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAACGTA 992607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151311925747682