Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq3603 542 8e-150 seq199 145 2e-30 >seq3603 Length=163330 Score = 542 bits (600), Expect = 8e-150 Identities = 712/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || |||||||| || || | |||||||| Sbjct 464 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 523 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||| | ||| |||||||| ||||| || || | || | | | | | |||| Sbjct 524 GCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCAACTACAGAT 583 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | ||||||||||||||| | || | |||| |||| Sbjct 584 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTAAAC 643 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || |||||||| |||||||| ||||| || |||||||| | | ||| ||||| || || Sbjct 644 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 703 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || |||||||| || ||||| ||||| Sbjct 704 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 763 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||||||| || ||||||| | || || | | |||||| || || | Sbjct 764 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTGGTTTCCCTG 823 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 824 ATTAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 883 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||||||||| || |||||||| || ||||||||||||||||| || Sbjct 884 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 943 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | |||| ||||||| || || || || || | |||||| ||||||| || || || Sbjct 944 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAGAAGCTTCCTTGA 1003 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| || || | | ||| |||||||| ||||| || |||||||| || || |||||| Sbjct 1004 CCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1063 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || || || | ||||||||||| || || ||||||||| | Sbjct 1064 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGACCCATGTAACAA 1123 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | |||||| | || | |||| | ||||| || ||||| | |||| Sbjct 1124 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAT 1183 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | || |||||||| || || || ||||| | ||||| || | | Sbjct 1184 TCATCAACGGATGCCGCTTCCCAGATCGGATAAAAGTGCAAACCGATAGCTGCAGAAGTA 1243 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | ||| || || || || ||||| ||||| | || || |||| || ||||| Sbjct 1244 GGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCA 1303 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || ||||| || || || || || || ||| ||||| |||||||| || || Sbjct 1304 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTT 1363 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429 |||| ||| ||| | || ||||| | || ||||||||||| | ||||||||||| | Sbjct 1364 GCGGTCAATAAGGTA-GGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTTTTC 1422 Query 22430 AGTAGAGGTGACCCAGGAACAAAA 22453 ||| ||| | |||| ||| || Sbjct 1423 AGTGCTGGTTATCCAGTTACAGAA 1446 >seq199 Length=1013994 Score = 145 bits (160), Expect = 2e-30 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| | ||||||||||| || || || |||||||| || || | |||||||| Sbjct 992388 GCTAGGTCTAAAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 992447 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||| | ||| |||||||| | ||| || || | || | | | | | |||| Sbjct 992448 GCRCGGTTGATAATATCAGCCCAAGAGTTAATTACACGACCTTGACTGTCAACTACAGAT 992507 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || | ||||||||| | ||||||||||||||| | || | |||| |||| Sbjct 992508 TGGTTGAAATYGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTAAAC 992567 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAA 21686 || |||||||| |||||||| ||||| || |||||| Sbjct 992568 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAA 992603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146201744399340