Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5 120 4e-22 seq44 107 2e-18 seq257 102 1e-16 seq8 100 3e-16 seq172 93.3 5e-14 seq4 93.3 5e-14 seq27 87.8 2e-12 seq19 87.8 2e-12 >seq5 Length=10760127 Score = 120 bits (132), Expect = 4e-22 Identities = 228/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || || ||| || || || || ||| || |||||||||| Sbjct 10377108 CCTGGAACCGGAAAGACTCTTCTTGCCAAGGCAATTGCTGGAGAAGCAGGTGTCCCATTC 10377167 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||||| | | ||||| ||||||||||||||||| ||||| | ||| Sbjct 10377168 TTCTCCATCTCTGGATCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGTT 10377227 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || |||||||| | | ||| || ||| || || ||||| || | ||||||||| Sbjct 10377228 CGTGATCTCTTCAAGAAGGCCAAGGAGAATGCTCCTTGCATTGTATTTGTGGATGAGATT 10377287 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||| || || ||| | | |||| | | | | || ||||| ||||| |||| Sbjct 10377288 GATGCAGTTGGACGACAAAGAGGAACTGGAATTGGAGG--AGGGAATGATGAGAGGGAAC 10377345 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612 |||| |||| || || || || || |||||||| ||||| | ||||| || | | Sbjct 10377346 AAACCCTTAACCAGCTTCTGACTGAAATGGATGGTTTTGAGGGAAACACTGGTATCATTG 10377405 Query 175613 TTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | ||||| || || || || | || || ||||| Sbjct 10377406 TAATTGCAGCAACCAACCGTGCAGACATTCTTGA 10377439 >seq44 Length=4426639 Score = 107 bits (118), Expect = 2e-18 Identities = 192/276 (70%), Gaps = 16/276 (6%) Strand=Plus/Plus Query 175322 CGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGT 175381 ||||||| ||||| || ||||| || | || || ||| | || || || || | Sbjct 1904264 CGGGAAA-ACCCTTCTAGCCCGTGCAGTTGCCGGAGAAGCTGGGGTGCCGTTTTTCTCAT 1904322 Query 175382 GCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATC 175441 | |||| || | ||||| || ||||||| || || || || ||||||||| || Sbjct 1904323 GTGCTGCATCAGAGTTTGTCGAATTGTTTGTGGGGGTTGGAGCGTCAAGGGTTCGGGACT 1904382 Query 175442 TCTTTGAAATCGCCCG--CGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 | ||||| | || |||||| | || || ||||| || ||||||||||||||||| Sbjct 1904383 TGTTTGATAAGGCAAAGTCGAAAAGCCCCC-TGCATTGTGTTTATTGATGAGATTGATGC 1904441 Query 175500 GGTGGGCAAGCAAC-----GCAGCGC-TGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 ||||||| ||| | |||| || ||| ||| | |||||||||||| || || Sbjct 1904442 CGTGGGCAGGCAGCGTGGAGCAGGGCTTGGAGGT------GGAAATGACGAGAGGGAGCA 1904495 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 |||||||| || || | || ||||||||||| || Sbjct 1904496 GACAATTAACCAGCTCTTGACGGAGATGGATGGTTT 1904531 >seq257 Length=623575 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 75189 |||| ||| | || || ||| ||| | ||||||||||||| ||| || | | || | Sbjct 424400 GACTTTGACTATGATTTCTTCGGTTTTAAAACCCTTGAGAGATCCTACCTGTTGAAGGTT 424459 Query 75190 CGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCA 75249 | | || | | | |||| |||||| ||||||| ||| |||| || | || ||||| Sbjct 424460 C-AGGGGAAGGTTGTAGAAAGGCCACAGCACATGTTGATGAGGGTTGCTGTTGGAATCCA 424518 Query 75250 CGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 75309 | ||| ||||||||||||| | | |||||| | |||||| || || ||||| Sbjct 424519 CAAGGATGACATTGATTCTGCTATCAAAACATACCATTTGATGTCACAGCGTTGGTTCAC 424578 Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| || | ||||| |||||||||||||| || || || || || Sbjct 424579 TCATGCCTCTCCAACTCTCTTCAATGCTGGGACTCCGAGGCCTCA 424623 >seq8 Length=10307871 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||| |||||||| | || || || || || ||||| || ||||||||||| Sbjct 4256271 TCCTTCGCGGAGCGCCTGATCGCATTCGCCTGCGTCGAGGGGATATTCTTCTCCGGCAGC 4256212 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||||| || || | |||||||||||||| || || ||||| ||| || |||||||| Sbjct 4256211 TTCTGTGCGATATTCTGGTTGAAGAAGCGCGGCCTGATGCCGGGCTTAACTTTCTCAAAC 4256152 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || | || || |||| ||||| || ||| Sbjct 4256151 GAGTTGATCTCGAGAGACGAGGGGCTACAC 4256122 >seq172 Length=1237761 Score = 93.3 bits (102), Expect = 5e-14 Identities = 191/282 (68%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || ||||||||||| | ||||| ||| | || || ||| | || || || Sbjct 424679 CCTGGAACTGGAAAGACCCTTTTGGCCCGTGCCGTTGCTGGAGAAGCTGGAGTGCCGTTT 424738 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| |||| | | ||||||||| |||| || || || || || |||||| Sbjct 424739 TTCTCGTGTGCTGCGTCGGAGTTTGTGGAGTTGTTCGTAGGAGTTGGAGCATCGAGGGTT 424798 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 || || | || |||| || ||| || | || || ||||| || ||||||| Sbjct 424799 CGGGACTTGTTCGAAAAGGC-----AAAGTCCAAGGCCCCCTGCATTGTATTTATTGATG 424853 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAG 175547 | |||||||| ||||| | ||| || | ||||| | | | | | ||| || ||||| Sbjct 424854 AAATTGATGCCGTGGGTAGGCAGCGTGGGGCTGGGCTCGGAGG--TGGAAACGATGAGAG 424911 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 || || ||||| || || || || || ||||||||||| || Sbjct 424912 GGAGCAGACAATCAACCAGCTTCTGACGGAGATGGATGGGTT 424953 >seq4 Length=11052854 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||||| || |||| ||| |||| ||| |||| ||||||||||| | ||||||||| Sbjct 7390785 TTCTGTGCAATTTTCTGGCTGAAAAAGAGGGGACTCATGCCAGGATTGACATTCTCAAAT 7390726 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || ||||||||| ||||||||||||||||| || ||||| Sbjct 7390725 GAGCTTATTTCCAGAGATGAGGGTCTCCACTGCGACTTTGC 7390685 >seq27 Length=6178458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAACGGC 75188 |||| || | || |||||||||| |||||||||| || |||| | ||||| | | || Sbjct 1664998 GACTTCGACTATGATTACTTTGGTTTCAAAACCCTCGA-AAGATCGTATCTATTGAAGGT 1665056 Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 || | || | | | || | ||||| ||||||| ||| |||| | | || |||| Sbjct 1665057 TC-AGGGAAAGGTTGTAGAGAGGCCACAACACATGTTGATGAGGGTTACTGTTGGGATCC 1665115 Query 75249 ACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 75308 || || || ||||| |||| | | | |||||| | |||||| ||| || ||||| Sbjct 1665116 ACAAAGATGATATTGAATCTGCCATTAAAACATACCATTTGATGTCTCAACGTTGGTTCA 1665175 Query 75309 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || || |||| || ||||||||||| || || ||||| || || Sbjct 1665176 CCCATGCTTCACCCACTCTCTTCAATGCAGGGACTCCAAGGCCCCA 1665221 >seq19 Length=7695933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 8/112 (7%) Strand=Plus/Plus Query 12704 TTTGGGCATCTTCTTACGAGTACAAATTATGATGACACA---AAGAAGA-GAATTGTGGG 12759 |||||||||||| | ||||| | ||||| ||||| ||| ||||||| || | ||||| Sbjct 557321 TTTGGGCATCTTTTGACGAGCAGTAATTACGATGATACAGTGAAGAAGACGACTGGTGGG 557380 Query 12760 AGGTCGCAACGGCTATGGTGCCAAGTTGACCAACATCTACTCATCGGAGTTT 12811 ||| || || |||||||| ||| |||||||||||| |||| | |||||| Sbjct 557381 AGG----AATGGATATGGTGCGAAGCTGACCAACATCTTCTCAACCGAGTTT 557428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596542731996640