Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq3603 540 1e-148 seq74 158 1e-33 seq199 129 7e-25 >seq3603 Length=163330 Score = 540 bits (598), Expect = 1e-148 Identities = 714/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||||||| Sbjct 455 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 514 Query 7942 CCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999 || | ||| || | ||| ||||| ||| |||| || ||| | ||| | | | Sbjct 515 CCAAGGTTAGCACGGTTGATAATA--TCAGCCCAAGTGTTAATTACACGACCTTGACTGT 572 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 |||| || |||||||| || || || || || ||||| || ||||| |||| ||||| | Sbjct 573 CAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTA 632 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTAC 8119 || ||| ||||| | || ||| || || | | ||| |||||||| || | | | | Sbjct 633 AAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAG 692 Query 8120 TGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACA 8178 ||||| |||| | ||||| |||||||| |||| ||||| || ||||||||||| || Sbjct 693 AATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACG 751 Query 8179 ATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCA 8238 |||||||| || ||||| |||||||| || | ||||| | || ||| || | |||| Sbjct 752 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCA 811 Query 8239 GTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGAT 8298 || || || ||||||| | ||| || || || ||||| |||||||||||||| || || Sbjct 812 GTGGTTTCCCTGATTAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 871 Query 8299 CCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCT 8358 || ||||| | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| Sbjct 872 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 931 Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418 || |||||||| | ||||||||| || |||||||| || ||||||||||| ||||||||| Sbjct 932 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAG 991 Query 8419 AATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCA 8478 || || ||||||| ||| || | ||||| || || |||||| | || ||||| Sbjct 992 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 1051 Query 8479 CTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTA 8538 |||||| ||| ||||| || | |||||| | ||| | | ||||| | | | Sbjct 1052 GAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGA 1111 Query 8539 CCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCG 8598 ||||||||| || | |||| | |||||| | | || | | ||| ||||| || Sbjct 1112 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 1171 Query 8599 TTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATA 8658 || || ||||| ||||| | | || |||||||| || ||||| ||||| || || ||| Sbjct 1172 TTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGATAAAAGTGCAAACCGATA 1231 Query 8659 GCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCT 8718 || |||| |||| | ||||||||||| || ||||||||||| | | || || Sbjct 1232 GCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGACCCA 1291 Query 8719 GCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATA 8778 | |||||||||||||||||| || ||||| || || ||||||||||| || || | ||| Sbjct 1292 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATA 1351 Query 8779 AAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAA 8838 || || || || | || ||| ||| ||||| | ||| || ||||| || | ||| Sbjct 1352 AATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAA 1411 Query 8839 AGTCTGTTGTTTGTACTTGTAACCCA 8864 || | ||| | || || || | ||| Sbjct 1412 AGACGGTTTTCAGTGCTGGTTATCCA 1437 >seq74 Length=3028681 Score = 158 bits (174), Expect = 1e-33 Identities = 237/333 (71%), Gaps = 3/333 (1%) Strand=Plus/Minus Query 8122 TTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAAT 8180 ||||| |||| | ||||| |||||||| | | ||||| || ||||| | | ||||| Sbjct 694749 TTGTTGAAACTA-GCATATTGGAAGATCAGTTCGCCAAAATAACCATGGGTGGTTACAAT 694691 Query 8181 ATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGT 8240 |||||| || |||| || || || |||||| | || | | | | ||| || Sbjct 694690 ATTATAAGTTTCTTTCCCTAAACTGAATCCATAACCTTCATTAACAAAATAATTTTCGGT 694631 Query 8241 TGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCC 8300 || || ||||||| | ||| || || | |||| |||||||||| || || || || Sbjct 694630 GGTTTCCCTGATTAAAATAGAAGTTACCGAGGAACAATGCATAGCACCAAACAGAGAACC 694571 Query 8301 ACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGC 8360 | ||| ||||| ||||| ||| ||| || || || |||||||| ||||| | || || Sbjct 694570 ATAGAATATACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTCCTAAGC 694511 Query 8361 TTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420 | |||||| | ||||||||| || |||| | | || |||| |||||| ||||||||||| Sbjct 694510 CTAGAATACAATCATGAAGTTGAAAGTACTA-AGATCCCTAAAGGCATACCATCAGAGAA 694452 Query 8421 TGAACCCTGACCAAATGGATATACTAAGAACAC 8453 || ||||||| |||||| | ||||| || Sbjct 694451 GCTTCCTTGACCAATTGGATAGATCAAGAAGAC 694419 >seq199 Length=1013994 Score = 129 bits (142), Expect = 7e-25 Identities = 165/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||| |||||| ||||||||||| ||||| | ||||||||||||||||||| Sbjct 992379 TCAACAGTAGCTAGGTCTAAAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 992438 Query 7942 CCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999 || | ||| || | ||| ||||| ||| |||| | ||| | ||| | | | Sbjct 992439 CCAAGGTTAGCRCGGTTGATAATA--TCAGCCCAAGAGTTAATTACACGACCTTGACTGT 992496 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 |||| || |||||||| || | || || || ||||| || ||||| |||| ||||| | Sbjct 992497 CAACTACAGATTGGTTGAAATYGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTA 992556 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAA 8105 || ||| ||||| | || ||| || || | | ||| |||||||| Sbjct 992557 AAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAA 992602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615834663097160