Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq3603 542 8e-150 seq199 145 2e-30 >seq3603 Length=163330 Score = 542 bits (600), Expect = 8e-150 Identities = 712/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | ||||||||||| | ||||||||||| || | Sbjct 1446 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1387 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | ||| ||| |||| || || |||||||| ||||| ||| || || Sbjct 1386 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 1328 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || || | ||||| ||||| Sbjct 1327 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1268 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || || || ||| | |||| | | || ||||| | ||||| || || || Sbjct 1267 TATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCGAT 1208 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 |||||||| || | ||||||||||| | ||||| || ||||| | |||| | || Sbjct 1207 CTGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 1148 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | |||||| | |||| || | ||||||||| || || ||||||||||| | || Sbjct 1147 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAATGGGAACTTAGTTTCCG 1088 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 || || ||| | || ||||| |||||| || || |||||||| || ||||| ||||| Sbjct 1087 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1028 Query 41653 TGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGAT 41712 ||| ||| | | || || |||| || || || ||||||| |||||| | || || Sbjct 1027 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTCTAGGAAT 968 Query 41713 ATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCC 41772 || || || ||||||| |||| | || ||||||||||||||||| || |||||||| || Sbjct 967 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 908 Query 41773 TTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGG 41832 ||||||||| | ||||| || || ||||| || || | ||| ||||||||| || Sbjct 907 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 848 Query 41833 TAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGG 41892 | | |||| || || | || | || || |||||| | | || || | || Sbjct 847 TTCCTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAATCTGCTAATGAAGG 788 Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 ||||| || |||||||||||||| ||||| ||||| || |||||||| || |||||||| Sbjct 787 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 728 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 || | ||||||||||||||||| || || ||||| ||| | | |||||||| || || Sbjct 727 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGC 668 Query 42013 TGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 ||| |||||||| |||||||| |||||| |||| | || | |||||||||||||| Sbjct 667 TGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACCATGGCTTTCAA 608 Query 42073 CTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACAC 42132 | | ||||||||||| || ||||||||| | | | | | || | || || ||||| Sbjct 607 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGTGTAATTAACAC 548 Query 42133 CTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGC 42192 |||||||| ||| | |||||||| |||||||| | || || |||||||| || || || Sbjct 547 TTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 488 Query 42193 ACACAACTTCCCGCTTGACCTTGC 42216 ||||||||||| || ||||| || Sbjct 487 TCACAACTTCCCTCTAGACCTAGC 464 >seq199 Length=1013994 Score = 145 bits (160), Expect = 2e-30 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42001 TTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTAC 42060 |||||| || ||||| |||||||| |||||||| |||||| |||| | || | || Sbjct 992603 TTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCAC 992544 Query 42061 CATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACA 42120 ||||||||||||| | ||||||||| | || ||||||||| | | | | | || | Sbjct 992543 CATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGACAGTCAAGGTCG 992484 Query 42121 GGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCA 42180 || || ||| | |||||||| ||| | ||||| || |||||||| | || || ||||| Sbjct 992483 TGTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATGGAAGTTATGCA 992424 Query 42181 TGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 ||| || || || ||||||||||| | ||||| || Sbjct 992423 TGAACGTAATGCTCACAACTTCCCTTTAGACCTAGC 992388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146208144125512