Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq3603 578 1e-160 seq199 132 1e-26 seq74 127 6e-25 seq102 87.8 5e-13 >seq3603 Length=163330 Score = 578 bits (640), Expect = 1e-160 Identities = 730/995 (73%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| ||||| Sbjct 1455 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTC 1396 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| | || |||| Sbjct 1395 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCA 1338 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || | Sbjct 1337 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTT 1278 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || |||||||||||| | | |||| | || || || | || | Sbjct 1277 ATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACT 1218 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | ||| ||||||||||||| || |||| |||||| | |||||||| || |||||| Sbjct 1217 TTTATCCGATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATG 1158 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | || | || | |||||| | | ||| | | |||| |||| || |||||||||| Sbjct 1157 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAATGGGAAC 1098 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 1097 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 1038 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || ||||| || ||| | |||| ||| |||| ||||| || || ||||| |||| Sbjct 1037 CTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGC 978 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || || || ||||| |||||||||||| | || ||||||||||| || ||||| | Sbjct 977 CTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCC 918 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || || ||| | ||||| || || ||||| || || || | ||| | Sbjct 917 TTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTG 858 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || || ||| | | | | ||||| |||||||| ||| Sbjct 857 CTATGCATGGTTCCTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAATCTG 798 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | || |||| |||||||||||||| || |||||||| || || || || |||| Sbjct 797 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG 738 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || Sbjct 737 GTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACAT 679 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| || || |||||||| || || || || ||||| ||| || | || |||| || Sbjct 678 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACC 619 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| || ||| | |||||||| || || |||||||| | ||||| | ||| || | Sbjct 618 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGT 559 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || || ||||||||||||||| | || ||||| |||||||| | || || ||||| Sbjct 558 GTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 499 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || || ||||| || |||||||| || || || || Sbjct 498 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 464 >seq199 Length=1013994 Score = 132 bits (146), Expect = 1e-26 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 43044 TCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCT 43103 ||| ||||| | ||||| || || |||||||| || || || || ||||| ||| || | Sbjct 992615 TCGTTCTTTACGTTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTT 992556 Query 43104 TGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGA 43163 || |||| || ||||| || ||| | |||||||| | || |||||||| | ||||| Sbjct 992555 AGGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGA 992496 Query 43164 TAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTT 43223 | ||| || ||| || |||||||||||||| | || || || |||||||| | Sbjct 992495 CAGTCAAGGTCGTGTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTAT 992436 Query 43224 TGAGGTGATGCACGAGCGGAATGCACATAACTTCCC 43259 || || ||||| || || ||||| || |||||||| Sbjct 992435 GGAAGTTATGCATGAACGTAATGCTCACAACTTCCC 992400 >seq74 Length=3028681 Score = 127 bits (140), Expect = 6e-25 Identities = 277/408 (68%), Gaps = 9/408 (2%) Strand=Plus/Plus Query 42661 CCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTC 42720 || ||||| | |||||| || | | | ||||| | || ||| | |||||| | || Sbjct 694371 CCTTGGATTTCTGTTGCATATTAAGGTCTTGTGGTAGATGCTACTACTGTCTTCTTGATC 694430 Query 42721 TATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTC 42780 |||||| |||| ||||| || || ||||| |||||| | || || | | ||| ||| Sbjct 694431 TATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGGATCTTAG-TACTTTC 694489 Query 42781 AACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTT 42840 ||||||||| | || ||| ||||| | | ||||| |||||||| || || || ||| | Sbjct 694490 AACTTCATGATTGTATTCTAGGCTTAGGACAACATCCTTATGCACCCATTTCACATGTTA 694549 Query 42841 GGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTT--GTCA 42898 ||||| || || |||| ||| || |||| ||||||||| || || | || | Sbjct 694550 GGTGTAGCTGGTATATTCTATGGTTCTCTGTTTGGTGCTATGCATTGT--TCCTCGGTAA 694607 Query 42899 CCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCG 42958 | ||| | | | | ||||| || ||||| | ||| | || || ||| Sbjct 694608 CTTCTATTTTAATCAGGGAAACCACCGAAAATTATTTTGTTAATGAAGGTTATGGATTCA 694667 Query 42959 GTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCT 43018 || || | | || |||||||| ||||| | | |||||||| ||||| || |||| Sbjct 694668 GTTTAGGGAAAGAAACTTATAATATTGTAACCACCCATGGTTATTTTGGCGAACTGATCT 694727 Query 43019 TCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTT 43065 |||||||||| | |||| || ||| || ||||| || | |||||| Sbjct 694728 TCCAATATGC-TAGTTTCAACAATTCTCATTCTTT--ACATTTTTCTT 694772 >seq102 Length=2242425 Score = 87.8 bits (96), Expect = 5e-13 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 42413 TAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCA 42472 |||| |||||||| |||||||||||||| ||||| ||||| || ||||| ||||| || | Sbjct 151891 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTA 151950 Query 42473 TCTCTGGTGCC 42483 ||||||||||| Sbjct 151951 TCTCTGGTGCC 151961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143526658859444