Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq3603 484 2e-132 seq199 140 1e-28 seq74 93.3 1e-14 >seq3603 Length=163330 Score = 484 bits (536), Expect = 2e-132 Identities = 705/987 (71%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||||||||| | || |||||| Sbjct 464 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 523 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| || |||| || | | || ||||| || Sbjct 524 GCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCAACTACAGAT 583 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 584 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTAAAC 643 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || |||||||| | |||||| || || ||| Sbjct 644 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 703 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 704 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 763 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTC--TG 26234 ||||| ||||| || || | || || | ||| || | | || || ||||| || Sbjct 764 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTGGTTTCCCTG 823 Query 26235 CAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAA 26294 | ||| || |||| ||||| || ||||||||| ||| || | || ||||| | Sbjct 824 -ATTAAACTAG-AAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATA 881 Query 26295 CCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATA 26354 | ||||| ||||| ||| || ||||||||||| || || || || || || ||||||| Sbjct 882 CACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA 941 Query 26355 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTT 26414 | | ||| ||||| |||||||||||||| || |||||||| |||||| || || |||| Sbjct 942 CAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAGAAGCTTCCTT 1001 Query 26415 GTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAA 26474 | || | || || | ||||| || || ||| || | | || |||| |||||||| Sbjct 1002 GACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAA 1061 Query 26475 CAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATG 26534 || ||||| || | ||| || || | | || |||||||| | | || || Sbjct 1062 CAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGACCCATGTAAC 1121 Query 26535 CTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCC 26594 ||||| || | ||||||||| | | ||| |||| ||| || || |||||||||| || Sbjct 1122 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACC 1181 Query 26595 ACTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 | || || | | |||| |||||||||||||| ||||| || | ||||| || ||| Sbjct 1182 ATTCATCAACGGATGCC-GCTTCCCAGATCGGATAAAAGTGCAAACCGATAGCTGCAGAA 1240 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 | || | | || || || || ||||||||||| || | || || || ||||| || Sbjct 1241 GTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGT 1300 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGT 26772 ||||| || ||||| |||||||| || || || || |||||||||| ||||| ||| | Sbjct 1301 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-GA 1359 Query 26773 AGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 ||| || | | |||| || ||||| | || ||||||||||| | || |||||||| Sbjct 1360 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTT 1419 Query 26833 CTCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || || | ||| | ||| || Sbjct 1420 TTCAGTGCTGGTTATCCAGTTACAGAA 1446 >seq199 Length=1013994 Score = 140 bits (154), Expect = 1e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| | || ||||| ||||||||||| || ||||||||||| | || |||||| Sbjct 992388 GCTAGGTCTAAAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 992447 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACA-TCTACTACTGA 25995 || ||||| | | ||||||||| | || || | | | || || || ||||| || Sbjct 992448 GCRCGGTTGATAATATCAGCCCAAG-AGTTAATTACACGACCTTGACTGTCAACTACAGA 992506 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || | |||||||||||||| || ||||| |||| |||||| | || || | Sbjct 992507 TTGGTTGAAATYGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAAGCAGTAAA 992566 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 ||| || || || || ||||||| ||| || |||||| | | |||||| Sbjct 992567 CCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAACGTAAAGAACG 992614 >seq74 Length=3028681 Score = 93.3 bits (102), Expect = 1e-14 Identities = 127/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 26264 TGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGG 26323 ||||||||| | || |||| ||| ||| | ||||| ||||| ||| || |||||| Sbjct 694593 TGCATAGCACCAAACAGAGAACCATAGAATATACCAGCTACACCTAACATGTGAAATGGG 694534 Query 26324 TGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATA 26383 ||||| || || || | | || | |||||| | ||| ||||| ||||||| | |||| Sbjct 694533 TGCATAAGGATGTTGTCCTAAGCCTAGAATACAATCATGAAGTTGAAAGTACTA-AGATC 694475 Query 26384 CCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACAC 26439 || | |||||| |||||| || || ||||| || | ||||| | ||||| || Sbjct 694474 CCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATTGGATAGATCAAGAAGAC 694419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147705680049760