Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq3603 627 1e-174 seq199 156 5e-33 seq74 147 3e-30 seq102 82.4 9e-11 >seq3603 Length=163330 Score = 627 bits (694), Expect = 1e-174 Identities = 721/970 (74%), Gaps = 0/970 (0%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || |||||||||||| | ||||||||| | | | | | Sbjct 1424 CTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCG 1365 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| | |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 1364 CAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 1305 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| || | ||||| ||||| || ||||||||||| || | | Sbjct 1304 GTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTC 1245 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || || ||| | ||||| ||||| || |||||||| ||| | |||||| Sbjct 1244 CTACTTCTGCAGCTATCGGTTTGCACTTTTATCCGATCTGGGAAGCGGCATCCGTTGATG 1185 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||||| |||||||||||||||| |||| | || | |||||| | | || | Sbjct 1184 AATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAG 1125 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 | ||| |||||| | ||||||||| || |||||| || |||||||||||||| Sbjct 1124 CTTGTTACATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTG 1065 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCG 155410 ||||||||| || || || || | ||||| ||||| ||| | | || || | | Sbjct 1064 CTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTG 1005 Query 155411 GTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT 155470 ||||||| |||||||||| |||||||| || |||||||||||||| |||| ||| Sbjct 1004 GTCAAGGAAGCTTCTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGA 945 Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 | || ||||| || || ||||| |||||||||||||| || |||||| | || ||||| | Sbjct 944 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTG 885 Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| ||||| || || || ||| ||||||||| ||||| ||||| || ||| ||| Sbjct 884 GTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTAA 825 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 || | ||||| ||||| | || ||| || | ||||||| ||||| ||||| |||| Sbjct 824 TCAGGGAAACCACTGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAG 765 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCAT 155710 |||||||||| || || ||||||||||| || || || || | |||||||| ||||| Sbjct 764 AAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 705 Query 155711 CCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCT 155770 |||||||| || | | | || |||||||| ||||| |||||||| || | |||| Sbjct 704 GTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCT 645 Query 155771 GGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACC 155830 || |||||| | ||| | || ||||| |||||||| || |||||||| ||||||| Sbjct 644 GGTTTACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 585 Query 155831 AGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCG 155890 | |||||||| ||| | ||| || || || ||||| || ||| | ||||| | Sbjct 584 AATCTGTAGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTG 525 Query 155891 CTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTG 155950 || |||||||||||||| ||||| || ||||| ||||||||||||||||| ||||| | Sbjct 524 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAG 465 Query 155951 CTGCTGCTGA 155960 |||||| ||| Sbjct 464 CTGCTGTTGA 455 >seq199 Length=1013994 Score = 156 bits (172), Expect = 5e-33 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 155737 TTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACG 155796 |||||||| ||||| |||||||| || | |||||| |||||| | ||| | || Sbjct 992602 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACC 992543 Query 155797 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAA 155856 ||||| |||||||| || |||||| | |||||||| |||||||| ||| | ||| Sbjct 992542 ATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGT 992483 Query 155857 GTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCAC 155916 || || | ||||| || ||| | ||||| ||| |||||||||||||| ||||| Sbjct 992482 GTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATGGAAGTTATGCAT 992423 Query 155917 GAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 || ||||| ||||||||||||||| | ||||| ||| ||| ||| Sbjct 992422 GAACGTAATGCTCACAACTTCCCTTTAGACCTAGCTACTGTTGA 992379 >seq74 Length=3028681 Score = 147 bits (162), Expect = 3e-30 Identities = 272/398 (68%), Gaps = 1/398 (0%) Strand=Plus/Plus Query 155326 CGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTC 155385 ||||| || |||| ||||||||| | ||||||||| | | | || | ||| Sbjct 694356 CGTCTGGGTATGCATCCTTGGATTTCTGTTGCATATTAAGGTCTTGTGGTAGATGCTACT 694415 Query 155386 GCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGT 155445 |||| ||| | | ||||| | |||||||| |||||||||| |||||| | || Sbjct 694416 ACTGTCTTCTTGATCTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGG 694475 Query 155446 ATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCAC 155505 |||| | ||||||| |||| ||| | || ||| | || | |||| |||||||||||| Sbjct 694476 ATCT-TAGTACTTTCAACTTCATGATTGTATTCTAGGCTTAGGACAACATCCTTATGCAC 694534 Query 155506 CCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCAC 155565 || || |||||| | || ||||| ||| | ||| ||| ||||| || ||||||||| Sbjct 694535 CCATTTCACATGTTAGGTGTAGCTGGTATATTCTATGGTTCTCTGTTTGGTGCTATGCAT 694594 Query 155566 GGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTAT 155625 |||| | ||| || ||| ||||| | ||||| || || | | | | || | Sbjct 694595 TGTTCCTCGGTAACTTCTATTTTAATCAGGGAAACCACCGAAAATTATTTTGTTAATGAA 694654 Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685 ||||| ||| | || ||||||||||||| ||||| | | ||||| || || Sbjct 694655 GGTTATGGATTCAGTTTAGGGAAAGAAACTTATAATATTGTAACCACCCATGGTTATTTT 694714 Query 155686 GGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTC 155723 || || |||||||| ||||| |||||||| || Sbjct 694715 GGCGAACTGATCTTCCAATATGCTAGTTTCAACAATTC 694752 >seq102 Length=2242425 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 155093 TAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCA 155152 |||| |||||||||||||||||||| || |||| ||| || | ||||| ||||| || | Sbjct 151891 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTA 151950 Query 155153 TCTCTGGTGCTGTTGTCCCTAGTTCAAA 155180 |||||||||| || | |||| ||| || Sbjct 151951 TCTCTGGTGCCATTATTCCTACTTCGAA 151978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584808860484680