Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq3603 504 2e-138 seq74 138 3e-28 seq199 122 3e-23 >seq3603 Length=163330 Score = 504 bits (558), Expect = 2e-138 Identities = 714/997 (72%), Gaps = 10/997 (1%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| ||||||||| ||||||||||| ||||| || ||||| ||||||||| Sbjct 455 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 514 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||| | || |||||||||||| ||| || ||| | | ||| Sbjct 515 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCA 574 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || ||||| || || |||||||| ||||| |||||||| || ||||| | Sbjct 575 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAA 634 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | |||| ||| || || | || || ||||| | || ||||| |||| | ||| | Sbjct 635 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAA 694 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| ||||||||| || || | || ||||| ||||| || ||||||||||| Sbjct 695 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 754 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 |||||||| || | || ||||| || | || || | || |||||| |||| ||| Sbjct 755 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTG 814 Query 40884 GTCTCCCGAATGATTGA---GGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCA 40940 || |||| ||||| | ||||| || | | || ||||||||| || | | Sbjct 815 GTTTCCC---TGATTAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 871 Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || || || || || || || || | ||| || ||||||||||| || |||||||| || Sbjct 872 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 931 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || ||||| |||| |||||||||||| || ||| |||||||| |||||||||||||||| Sbjct 932 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAG 991 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCT 41120 || || ||||| | ||| || | ||||| ||||| ||| |||| | |||||| Sbjct 992 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 1051 Query 41121 GTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTA 41180 | ||||| ||| ||||| || | |||||| || | | | ||||||||| | | | Sbjct 1052 GAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGA 1111 Query 41181 CCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCG 41240 || ||| ||||| || | ||| ||||| | ||||| |||| ||| || || || Sbjct 1112 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 1171 Query 41241 TTGTATAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGAT 41299 ||||||| ||| || || | | |||| ||||||||||| || || || || | ||||| Sbjct 1172 TTGTATAACCATTCATCAACGGATGCC-GCTTCCCAGATCGGATAAAAGTGCAAACCGAT 1230 Query 41300 TGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCC 41359 || ||| | |||| | || ||||| ||||||||||| || || | || || || Sbjct 1231 AGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGACCC 1290 Query 41360 GGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTAT 41419 ||||| || ||||| || ||||| |||||||| || || || || || ||||| || || Sbjct 1291 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAAT 1350 Query 41420 GAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGT 41478 || ||| | || || || | ||| | || ||||| | ||||| ||||| || | || Sbjct 1351 AAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGT 1409 Query 41479 ATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | || ||||| || ||||| || | ||||||||| || Sbjct 1410 AAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1446 >seq74 Length=3028681 Score = 138 bits (152), Expect = 3e-28 Identities = 276/402 (69%), Gaps = 19/402 (5%) Strand=Plus/Minus Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 ||||||||| ||||||||| || || ||| ||||| ||||| || | | ||| || Sbjct 694750 ATTGTTGAAACTAGCATATTGGAAGATCAGTTCGCCAAAATAACCATGGGTGGTTACAAT 694691 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTA-----TACCCGTAGTTCTGTGATTCAGTT 40877 |||||||| || |||| | ||||| | || || | || | | | || Sbjct 694690 ATTATAAGTTTCT--TTCC---CTAAACTGAATCCATAACCTTCATTAACAAAATAATTT 694636 Query 40878 TCCGTGGTCTCCCGAATGATTGAG---GAAGTAACAAGGCTTCCGTGCATAGCAGCAAAC 40934 || ||||| |||| ||||| | ||||| || | | ||||||||| ||||| Sbjct 694635 TCGGTGGTTTCCC---TGATTAAAATAGAAGTTACCGAGGAACAATGCATAGCACCAAAC 694579 Query 40935 AAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTG 40994 | || |||| || | || || || || | ||| || ||||||||||| || |||||| Sbjct 694578 AGAGAACCATAGAATATACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTG 694519 Query 40995 TGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCA 41054 | | || | ||| |||| |||||||||||| || | | ||| ||||||||||||||| Sbjct 694518 TCCTAAGCCTAGAATACAATCATGAAGTTGAAAGTACTA-AGATCCCTAAAGGCATACCA 694460 Query 41055 TCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAG-AGCTGCTGACAA 41113 |||||||| || ||||| | |||||| | ||||| |||| ||| ||| || || Sbjct 694459 TCAGAGAAGCTTCCTTGACCAATTGGATAGATCAAGAAGACAG-TAGTAGCATCTACCAC 694401 Query 41114 TGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAG 41155 || || ||||| ||| | ||||| || |||||| || Sbjct 694400 AAGACCTTAATATGCAACAGAAATCCAAGGATGCATACCCAG 694359 >seq199 Length=1013994 Score = 122 bits (134), Expect = 3e-23 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| ||||| ||| ||||||||||| ||||| || ||||| ||||||||| Sbjct 992379 TCAACAGTAGCTAGGTCTAAAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 992438 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||| | || ||||||||||| ||| || ||| | | ||| Sbjct 992439 CCAAGGTTAGCRCGGTTGATAATATCAGCCCAAGAGTTAATTACACGACCTTGACTGTCA 992498 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || ||||| || | |||||||| ||||| |||||||| || ||||| | Sbjct 992499 ACTACAGATTGGTTGAAATYGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCTAAA 992558 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAA 40747 | |||| ||| || || | || || ||||| | || ||||| Sbjct 992559 GCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAA 992602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143696251603002