Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq3603 627 1e-174 seq74 174 2e-38 seq199 141 1e-28 >seq3603 Length=163330 Score = 627 bits (694), Expect = 1e-174 Identities = 735/992 (74%), Gaps = 6/992 (1%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||||| Sbjct 455 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 514 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC---G 67469 ||||| || | ||| | || || |||||||| ||| || || |||| | Sbjct 515 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTAC---ACGACCTTGACTG 571 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || ||||||||||| |||||||| || |||||||| ||||| || | ||| Sbjct 572 TCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCT 631 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | ||||| |||||||| | || ||||| | ||||| |||||||| || | | | Sbjct 632 AAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGA 691 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 || ||||||||| ||||| ||||||||||| || || || || ||||||||||| || Sbjct 692 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACG 751 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||| ||||| ||||| ||||||| | || || || | ||| Sbjct 752 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCA 811 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | |||||| || | ||||| ||||||||||| || || || Sbjct 812 GTGGTTTCCCTGATTAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 871 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| ||||| || | ||| || |||||||||||||||||||||||||| Sbjct 872 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 931 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || ||||| || | |||| |||| ||||||||||| || || |||||||| | |||||| Sbjct 932 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAG 991 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 || |||||||| | || |||| |||||| ||||| || || | || ||||| Sbjct 992 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 1051 Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009 || ||||| ||| ||||||||||||||||| |||||| || ||||||||| | |||| Sbjct 1052 GAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCATTCACGA 1111 Query 68010 CCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCA 68069 || ||| | | || | | |||||| | || | |||| |||| |||||| Sbjct 1112 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCA 1171 Query 68070 TTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATT 68129 || || ||||| ||||| | | ||| ||||||||||| ||||| ||||| | |||||| Sbjct 1172 TTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATCGGATAAAAGTGCAAACCGATA 1231 Query 68130 GCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCT 68189 || ||| |||||| || |||||||| || || ||||| || || | || || || Sbjct 1232 GCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGACCCA 1291 Query 68190 GCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATG 68249 | ||||||||| | |||||||| ||||| |||||||| || |||||||| ||||| || Sbjct 1292 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATA 1351 Query 68250 AAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAG 68309 || || | ||| | | ||| ||| |||||||| ||||||||||| |||| || Sbjct 1352 AATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAA 1411 Query 68310 ATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 | || || ||| ||| | ||||||||| Sbjct 1412 AGACGGTTTTCAGTGCTGGTTATCCAGTTACA 1443 >seq74 Length=3028681 Score = 174 bits (192), Expect = 2e-38 Identities = 278/398 (70%), Gaps = 1/398 (0%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 || ||||||||| ||||| |||||||||| || || || ||||| | | ||| Sbjct 694752 GAATTGTTGAAACTAGCATATTGGAAGATCAGTTCGCCAAAATAACCATGGGTGGTTACA 694693 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| |||| || | ||| ||||| | || | | | || Sbjct 694692 ATATTATAAGTTTCTTTCCCTAAACTGAATCCATAACCTTCATTAACAAAATAATTTTCG 694633 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | |||||| || |||| |||||||||| ||| || ||| Sbjct 694632 GTGGTTTCCCTGATTAAAATAGAAGTTACCGAGGAACAATGCATAGCACCAAACAGAGAA 694573 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 ||| ||||| ||| ||||| || | ||| || |||||||||||||||||||||| || Sbjct 694572 CCATAGAATATACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTCCTAA 694513 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || | ||| || | |||| |||| ||||||| | | || || | |||||| | |||||| Sbjct 694512 GCCTAGAATACAATCATGAAGTTGAAAGTACTA-AGATCCCTAAAGGCATACCATCAGAG 694454 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 || |||||||| | ||||||| |||||| |||| || | ||| || | Sbjct 694453 AAGCTTCCTTGACCAATTGGATAGATCAAGAAGACAGTAGTAGCATCTACCACAAGACCT 694394 Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACG 67987 | ||||| ||| | ||||||||| ||||||| ||||| Sbjct 694393 TAATATGCAACAGAAATCCAAGGATGCATACCCAGACG 694356 >seq199 Length=1013994 Score = 141 bits (156), Expect = 1e-28 Identities = 168/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||| ||| ||||| | ||||||||||||||| ||||| || |||||||||||||| Sbjct 992379 TCAACAGTAGCTAGGTCTAAAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 992438 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC---G 67469 ||||| || | ||| | || || ||||||| ||| || || |||| | Sbjct 992439 CCAAGGTTAGCRCGGTTGATAATATCAGCCCAAGAGTTAATTAC---ACGACCTTGACTG 992495 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || ||||||||||| | |||||| || |||||||| ||||| || | ||| Sbjct 992496 TCAACTACAGATTGGTTGAAATYGAAACCATTTAGGTTGAAAGCCATGGTGCTGATACCT 992555 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAA 67576 | ||||| |||||||| | || ||||| | ||||| |||||||| Sbjct 992556 AAAGCAGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAA 992602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566921666115480