Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq37 145 1e-29 seq97 143 5e-29 seq65 125 1e-23 seq22 123 4e-23 seq31 114 2e-20 seq17 114 2e-20 seq30 86.0 1e-11 >seq37 Length=4974474 Score = 145 bits (160), Expect = 1e-29 Identities = 171/230 (74%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| ||||| |||||||||||||| | || || |||| | ||||| Sbjct 2663392 ATTCCACCTCTCAAACGAAGAACCAGATGCAATGTGGATTCCTTCTGAATAATGTAGTCT 2663451 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| | ||| |||| ||| || || || || || | |||||| || ||||| Sbjct 2663452 GCCAAGGTTCGACCATCCTCTAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGG- 2663510 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| ||||||| || | ||| |||||| || || ||| Sbjct 2663511 GGGATTCCTTCTTTATCTTGGATTTTGGCCTTGACATTGTCAATAGTGTCAGAGCTTTCA 2663570 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || || || ||||| || ||||| Sbjct 2663571 ACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 2663620 Score = 84.2 bits (92), Expect = 4e-11 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||||||||||||| ||||| || | |||||||| ||||| || || |||| || Sbjct 2663012 ATCCTCTAATTGTTTTCCAGCAAATATGAGCCTCTGTTGGTCAGGTGGGATGGCTTCCTT 2663071 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | || | ||| || || || || || ||||| || || || Sbjct 2663072 GTCCTGAATCTTAGCCTTAACATTGTCTATGGTGTCTGAGCTTTCTACTTCAAGCGTGAT 2663131 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | ||||| || ||||| |||||||| Sbjct 2663132 AGTTTT-CCCGGAAGCGTCTTAACAAAGATTTGCAT 2663166 >seq97 Length=2389559 Score = 143 bits (158), Expect = 5e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || |||||||| ||||| || || || | ||||| ||||| ||| || Sbjct 873720 AATTTGCATTCCCCCTCTCAACCGAAGAACTAGGTGGAGTGTAGATTCTTTTTGAATGTT 873779 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | || || | ||| || | ||| ||||| ||||| || ||||| || || Sbjct 873780 GTAATCAGCCAAAGTCCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGCTG 873839 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || ||||| || || ||||| ||||||| ||| | ||| ||| ||||| || Sbjct 873840 GTCTGGGGGGATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTATCAATTGTATCAGA 873899 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||| ||||||||||| || ||||| || || || ||||| |||||||| Sbjct 873900 ACTCTCCACTTCGAGAGTTATAGTCTTTCCTGTGAGGGTCTTGACAAAGATTTGCAT 873956 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||| | || ||| ||||||||||| |||| ||| || ||| |||||||| Sbjct 873499 ATACCTCCTCGAAGTCTAAGAACCAGATGCAAAGTAGACTCCTTCTGAATGTTATAGTCA 873558 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| |||| || ||||| |||||||| | ||||| || || || Sbjct 873559 GCCAAGGTCCTGCCATCCTCTAGCTGCTTTCCAGCAAAAATCAGCCTCTGCTGGTCTGGG 873618 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || || | ||| | ||| ||| ||||| || |||| Sbjct 873619 GGAATACCCTCCTTGTCCTGGATCTTTGCTTTGACATTATCAATCGTATCTGAGCTCTCA 873678 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| || || || || ||||| |||||||| ||||||||| Sbjct 873679 ACCTCAAGGGTTATGGTCTTTCCAGTAAGCGTCTTTACAAAAATTTGCATT 873729 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||||||||||| || || || || || |||| || || | | Sbjct 873058 CGAAGCACCAAATGCAATGTAGATTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGTCCA 873117 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || || || |||||||| | ||||| |||||||| || || || || || Sbjct 873118 TCTTCCAACTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCAGGTGGAATACCCTCCTTG 873177 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| ||| ||||| || ||| || || ||||| || Sbjct 873178 TCTTGAATCTTTGCCTTCACATTATCAATGGTATCTGAGCTCTCTACCTCCAGAGTAATT 873237 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | || || ||||| || ||||| Sbjct 873238 GTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCAT 873272 >seq65 Length=3230173 Score = 125 bits (138), Expect = 1e-23 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | || || || || || | || | || || ||| || || || Sbjct 2676569 ATTCCACCTCTGAGACGGAGAACAAGGTGGAGAGTGGATTCCTTCTGAATGTTRTARTCA 2676628 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || ||| ||| || | ||| ||||| ||||| || | |||||| ||||||||| Sbjct 2676629 GCCAGTGTCCTACCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTCTGCTGATCAGGA 2676688 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || |||| || | ||| || ||||| ||| |||| Sbjct 2676689 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATCAGAACTCTCA 2676748 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | ||| || ||||| || ||||| || || ||||| ||||||||| Sbjct 2676749 ACCTCCARAGTAATGGTTTTCCCGGTTAGAGTCTTGACAAAGATTTGCATT 2676799 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| ||||||||||| |||||||| | || | ||| || || || Sbjct 2676791 ATTTGCATTCCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTG 2676850 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || |||| ||| || | ||| || || ||||| || | | ||| || Sbjct 2676851 TAATCTGCCAAGGTTCGGCCATCCTCCAGTTGCTTACCAGCAAAGATAAGCCGCTGCTGG 2676910 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||| || ||||| ||||||| || | ||| |||||| ||||| Sbjct 2676911 TCAGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTGTCAATAGTGTCGGAG 2676970 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || || || ||||| || ||||| Sbjct 2676971 CTTTCAACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 2677026 Score = 105 bits (116), Expect = 1e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | || || || |||| || | |||| ||| || ||||| || || Sbjct 2676113 ATACCRCCACGCAGACGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAATCA 2676172 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| |||| || || || ||||| || | ||||||||||| || Sbjct 2676173 GCTAGGGTCCTTCCATCCTCTAGCTGCTTCCCTGCAAAGATAAGCCTCTGTTGATCTGGT 2676232 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 |||||||| || || ||||| || |||| || | ||| |||||||| || ||| Sbjct 2676233 GGTATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTATCGATAGTATCAGAGCTCTCC 2676292 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| | ||| || || ||||| || || ||||| |||||||| Sbjct 2676293 ACTTCCAAAGTAACAGTCTTCCCAGTTAGTGTCTTGACAAAGATTTGCAT 2676342 >seq22 Length=7127660 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| ||||||||||| |||||||| | || | ||| || || || Sbjct 3801413 ATTTGCATTCCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTG 3801354 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || |||| ||| |||| |||||| || ||||| || | | ||| || Sbjct 3801353 TAATCTGCCAAGGTTCGGCCATCCTCTAGTTGTTTACCAGCAAAGATAAGCCGCTGCTGG 3801294 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||| || ||||| ||||||| || | ||| |||||| ||||| Sbjct 3801293 TCAGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTGTCAATAGTGTCGGAG 3801234 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || ||||| || || || ||||| || ||||| Sbjct 3801233 CTTTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTCTTAACAAAAATCTGCAT 3801178 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || || || |||| || | |||| ||| || ||||| || || Sbjct 3802037 ATACCACCACGCAGACGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAATCA 3801978 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| || | || || || ||||| || | ||||||||||| || Sbjct 3801977 GCTAGGGTCCTTCCATCCTCCAGCTGCTTCCCTGCAAAGATAAGCCTCTGTTGATCTGGT 3801918 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 |||||||| || || ||||| || |||| || | ||| || ||||| || ||| Sbjct 3801917 GGTATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTCTCC 3801858 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || || || || ||||| || || ||||| |||||||| Sbjct 3801857 ACTTCCAAAGTAATCGTCTTCCCAGTTAGTGTCTTGACAAAGATTTGCAT 3801808 >seq31 Length=5807843 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| ||||||||||| |||||||| | || | ||| || || || Sbjct 4127525 ATTTGCATTCCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTG 4127466 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || |||| ||| |||| ||| || || ||||| || | | ||| || Sbjct 4127465 TAATCTGCCAAGGTTCGGCCATCCTCTAGTTGCTTACCAGCAAAGATAAGCCGCTGCTGG 4127406 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || ||||||| || ||||| ||||||| || | ||| |||||| ||||| Sbjct 4127405 TCAGGGGGGGTTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTATCAATAGTGTCGGAG 4127346 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || ||||| || || || ||||| || ||||| Sbjct 4127345 TTTTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTCTTAACAAAGATCTGCAT 4127290 >seq17 Length=7869039 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || ||||||||||| |||| ||| || || || || || | || || | | | Sbjct 3557865 CGGAGGACCAGATGCAAGGTAGACTCCTTCTGGATGTTGTAATCAGCCAAAGTACGACCA 3557924 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || |||||||||||||||| || || || || || || || || || ||| Sbjct 3557925 TCCTCGAGCTGCTTTCCGGCAAAAATTAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTA 3557984 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | || | || ||| ||||| || ||||||||| ||||| || Sbjct 3557985 TCCTGAATTTTTGCCTTGACGTTATCAATCGTATCAGAGCTCTCAACTTCAAGAGTGATT 3558044 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || ||||| || || ||||| ||||||||| Sbjct 3558045 GTTTTTCCGGTTAGAGTCTTGACAAAGATTTGCATT 3558080 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || | ||||| || ||||| || || |||||||| || || || Sbjct 3557706 TGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATCCCTTCTTTGTCCTGGATC 3557765 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | |||| ||| ||| ||||| || |||||| || ||||| ||||| || || Sbjct 3557766 TTTGCCTTTACATTGTCAATTGTATCAGAGCTCTCAACCTCGAGAGTGATAGTCTTGCCA 3557825 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||| || ||||| || ||||| Sbjct 3557826 GTCAACGTCTTGACAAAGATCTGCAT 3557851 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||| |||| |||| ||| || || || || || | || || | | ||| Sbjct 3556956 AGCACCAAGTGCAGCGTAGACTCCTTCTGTATGTTGTAATCAGCCAAGGTGCGACCATCC 3557015 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || |||||||||||||| | ||||| ||||| || || || || ||||| || Sbjct 3557016 TCGAGCTGCTTTCCGGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCTTTGTCC 3557075 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || || | || | ||| ||| ||||| || |||||| || || || || ||| Sbjct 3557076 TGAATCTTCGCCTTCACATTGTCAATGGTATCCGAGCTCTCAACCTCCAGGGTGATGGTT 3557135 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| || || || ||||| |||||| Sbjct 3557136 TTCCCAGTTAGAGTCTTCACGAATATCTGCATT 3557168 >seq30 Length=5940761 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||||||||| | || || || || ||||| | || || | | | Sbjct 3345714 CGGAGCACCAGATGCAATGTGGATTCCTTTTGTATGTTGTAGTCAGCCAAGGTGCGACCA 3345773 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || | ||||| || || || || || || ||||| Sbjct 3345774 TCCTCCAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTG 3345833 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | || ||| ||||| || |||||| |||||||| || Sbjct 3345834 TCCTGAATCTTTGCCTTCACGTTGTCAATGGTATCTGAGCTCTCAACCTCTAGAGTGATG 3345893 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || ||||| || ||||| Sbjct 3345894 GTTTTCCCGGTCAGGGTCTTCACAAAAATCTGCAT 3345928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899613881814960