Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq6 136 6e-27 seq97 98.7 1e-15 seq17 96.9 5e-15 >seq6 Length=10738081 Score = 136 bits (150), Expect = 6e-27 Identities = 365/552 (66%), Gaps = 13/552 (2%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || || ||||| ||| || || || ||||| ||||| || ||||| ||| |||||| Sbjct 5633820 CAAGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAAAATGTTAAC 5633761 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAA-CTACTAGAAAAGAA 18276 || ||||| | || | ||| || | ||| ||||||| || ||| || | ||| ||||| Sbjct 5633760 CCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGC-GCAAAAGCTGCCAGAGAAGAA 5633702 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 ||| ||||| ||||| ||||| || | || | ||| || ||| | | || | | Sbjct 5633701 TATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAACTGGTAA- 5633643 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 |||| ||| ||| | ||| | || || ||| |||| || || | Sbjct 5633642 --TCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGTG 5633585 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAA-AGAAT--A 18453 ||||| | | ||| || | ||| || || || | || |||||| || | | Sbjct 5633584 AAACAGACGGTTTTTCTCGGCTGCATCCTTGATGTAGGATTC---TAACAAGAGGCTGTA 5633528 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 ||| || ||||| ||| | || || ||||| || |||| || || | | |||||||| Sbjct 5633527 CATCTCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCTCGGA 5633468 Query 18514 ATATTGAATCTCGCT-ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 || ||||| || | || ||| | ||| || || |||| ||||| |||| || Sbjct 5633467 ATTTTGAACTTCTTTCATGAAA-CGAGAGGCCAGGTTTTCGATAACAATACCATCAGAAG 5633409 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 ||||| || || | |||| ||||||| ||||| || | | ||||| | || Sbjct 5633408 CAGCGAAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTTTCCC 5633349 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | ||| || ||||| || || ||||||||||| | ||||| ||||| | ||||||| Sbjct 5633348 AGTCACGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCT 5633289 Query 18693 GTTTGTACATTT 18704 |||||||||| Sbjct 5633288 TCTTGTACATTT 5633277 >seq97 Length=2389559 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || ||||| ||||| || | ||||| || |||| Sbjct 873956 ATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACTATAACTCTCGAAGTGGAGAGTTCT 873897 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| ||||| ||||| || || || || || ||||| || Sbjct 873896 GATACAATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCAG 873837 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| || ||||| || |||||| | | ||||| | ||||| || Sbjct 873836 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGGACTTTGGCTGATTACAAC 873777 Query 156003 AT 156004 || Sbjct 873776 AT 873775 >seq17 Length=7869039 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || | || |||||||| || || | ||||| || || Sbjct 3558080 AATGCAAATCTTTGTCAAGACTCTAACCGGAAAAACAATCACTCTTGAAGTTGAGAGCTC 3558021 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||||| || ||||| || ||||| || ||||| || ||||| || Sbjct 3558020 TGATACGATTGATAACGTCAAGGCAAAAATTCAGGATAAGGAGGGCATTCCCCCAGACCA 3557961 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| | |||| |||||| ||||||||||| ||| | ||||| | ||||| || Sbjct 3557960 GCAAAGGCTAATTTTTGCCGGAAAGCAGCTCGAGGATGGTCGTACTTTGGCTGATTACAA 3557901 Query 156002 TAT 156004 || Sbjct 3557900 CAT 3557898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731839038314800