Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8 143 3e-28 seq6 114 2e-19 >seq8 Length=10307871 Score = 143 bits (158), Expect = 3e-28 Identities = 197/273 (72%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||| ||||| |||||||| || | |||| | | |||| Sbjct 4256408 GAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCACGGGCCTCGGAGATTTGG 4256467 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || |||||||||||||| | || ||||| ||| || || ||||| || ||||| Sbjct 4256468 ACTTCCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACCGTCAGAAGCAGCGAAG 4256527 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || ||||| || || | || ||||| |||||| | | | || |||||| |||| Sbjct 4256528 AAGGCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTTCCCAGT-GACG 4256586 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | | || | ||| || || || ||||| ||||||| ||||| ||||| || ||||| Sbjct 4256587 GAGATCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTA 4256646 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||| ||||||| ||| | || | || ||||| Sbjct 4256647 CATTTCCCATATTTGGGGATATTGAATTGGGAA 4256679 Score = 127 bits (140), Expect = 2e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 869218 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAA 869277 ||| ||||| |||||||||||||| | ||| || || || ||||| ||||| ||||| || Sbjct 4256167 GCCCGGCATCAGGCCGCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAAGAA 4256226 Query 869278 GATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTT 869337 || ||||||||| ||| || |||| || ||||| || |||| ||| || Sbjct 4256227 TATCCCCTCGACGCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAACC------ 4256280 Query 869338 GTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 || |||||| | | ||||| ||||| |||||| ||| | || || || ||||| || Sbjct 4256281 GTCGATCCATTGGAGGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGC 4256340 Query 869398 GCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGA 869432 ||| || ||| || ||| ||||||| ||||||| Sbjct 4256341 GCGGAACAGGCGGCTCTTCTCGGCCGAATCCTTGA 4256375 >seq6 Length=10738081 Score = 114 bits (126), Expect = 2e-19 Identities = 192/275 (70%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| |||||||||||||| || || ||||| ||||| ||||| | |||| | || Sbjct 5633522 CCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCTCGGAATTTT 5633463 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || |||||||| || ||||||||| ||| || || || || || |||| Sbjct 5633462 GAACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAATACCATCAGAAGCAGCGA 5633403 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || || | | || ||||| |||| ||| | || |||||| | Sbjct 5633402 AGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTTTCCCAGTC-A 5633344 Query 869811 CGGTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 || | || | |||||| || || ||||||||||||| |||||||||||||| ||| Sbjct 5633343 CGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTG 5633284 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||| ||||| | || |||| | || ||||| Sbjct 5633283 TACATTTCCCAGATTTCAGGGTATTGAATTGGGAA 5633249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106843520947151