Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq17 104 2e-17 seq65 100 2e-16 seq30 100 2e-16 seq1 96.9 3e-15 seq31 93.3 3e-14 seq143 91.5 1e-13 seq37 89.7 4e-13 seq22 86.0 5e-12 seq97 84.2 2e-11 >seq17 Length=7869039 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| ||||| || || ||| |||| || |||||||| ||| | || ||| Sbjct 3557168 AATGCAGATATTCGTGAAGACTCTAACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTC 3557109 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || ||||||| |||||||| || | || ||||| Sbjct 3557108 GGATACCATTGACAATGTGAAGGCGAAGATTCAGGACAAAGAGGGTATCCCACCAGATCA 3557049 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || |||| ||| || || ||||| ||||||| | || |||| |||||||| Sbjct 3557048 GCAGAGGCTCATTTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCTGATTACAA 3556989 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || || |||||| ||||| ||||| | || || || || |||| Sbjct 3556988 CATACAGAAGGAGTCTACGCTGCACTTGGTGCTCAGGCTTCGCGGTGGAA 3556939 >seq65 Length=3230173 Score = 100 bits (110), Expect = 2e-16 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| ||| ||||||| ||||||||||| | || ||| | Sbjct 2676799 AATGCAAATCTTTGTCAAGACTCTAACCGGGAAAACCATTACTYTGGAGGTTGAGAGTTC 2676740 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | | || || ||||| ||||| ||||| | || ||||| Sbjct 2676739 TGATACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCTGATCA 2676680 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||||||| | ||| || || || || || |||| || ||| |||| || || || Sbjct 2676679 GCAGAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGTAGGACACTGGCTGAYTAYAA 2676620 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| || ||||| || Sbjct 2676619 CATTCAGAAGGAATCCAC 2676602 >seq30 Length=5940761 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| ||| | ||||| || || || || | ||| ||| Sbjct 3346613 AATGCAAATTTTTGTCAAGACTCTCACCGGAAAGACAATCACTCTTGAAGTTGAGAGCTC 3346554 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | | || || |||||| ||||| || ||| | ||| || || Sbjct 3346553 CGACACGATTGACAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 3346494 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | |||| ||| || || ||||| ||||||| || || |||| |||||||| Sbjct 3346493 ACAAAGGTTGATTTTTGCTGGGAAGCAGCTTGAGGATGGAAGGACCCTGGCAGATTACAA 3346434 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || || ||||| |||||| |||| | | || || ||||| Sbjct 3346433 CATCCAGAAGGAGTCTACCTTGCACCTGGTCCTCCGTCTCCGTGGGGG 3346386 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||| | ||||| |||||||||||| | ||| ||| Sbjct 3346384 ATGCAGATCTTTGTCAAGACTCTCACCGGAAAAACCATTACCCTTGAAGTTGAGAGCTCT 3346325 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||| ||| ||||| |||||| | || || || Sbjct 3346324 GATACAATTGATAATGTGAAGGCGAAAATTCAGGACAAGGAAGGCATCCCACCAGACCAG 3346265 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || |||||||| ||||||| | ||| | || |||||||| Sbjct 3346264 CAGAGGCTAATCTTTGCCGGGAAACAGCTCGAGGATGGTCGGACACTTGCTGATTACAAT 3346205 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || ||||| |||| |||| | ||||| || ||||| Sbjct 3346204 ATCCAGAAGGAGTCTACCCTGCATCTGGTTCTTAGACTTCGTGGGGG 3346158 >seq1 Length=14325340 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || ||| | ||| |||||||||||||| |||| ||| |||||||| |||| Sbjct 9211799 GACAAGGAGGGCATTCCCCCTGATCAACAAAGACTAATTTTTGCTGGTAAACAATTGGAA 9211740 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| | | || | || ||||||||||| ||||| ||||| || |||||| |||| Sbjct 9211739 GATGGCCGTACTCTTGCAGATTACAACATCCAAAAGGAATCGACCTTGCACCTGGT 9211684 >seq31 Length=5807843 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/205 (70%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| ||| ||||||| |||||||||||| | || ||| | Sbjct 4127517 AATGCAAATCTTTGTCAAGACTCTAACCGGGAAAACCATTACCCTGGAGGTTGAGAGTTT 4127576 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | | || || ||||| ||||| ||||| | || | ||||| Sbjct 4127577 TGATACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCTTGATCA 4127636 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATG-------GCGG 110444 || |||||||| | ||| || || || || || |||| || ||| || || | Sbjct 4127637 GCAGAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGTAGGACACTGGCTGACAGCTG 4127696 Query 110445 ATTACAACATTCAAAAAGAATCTAC 110469 | ||||||||||| || ||||| || Sbjct 4127697 ACTACAACATTCAGAAGGAATCCAC 4127721 >seq143 Length=1536321 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||| || | |||||||| || || ||| | || ||| | Sbjct 384589 AATGCAGATTTTCGTCAAGACCCTTACCGGCAAGACTATCACCCTGGAGGTAGAGAGTTC 384530 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | | ||||| ||||| ||||| || || | ||| ||| || Sbjct 384529 CGACACGATCGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 384470 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | || || |||||||| ||||||| | |||| |||| || ||||| Sbjct 384469 GCAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGCCGAACCTTGGCCGACTACAA 384410 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || ||||| || | ||| ||||| | | ||||| || || Sbjct 384409 CATTCAGAAGGAATCAACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 384362 >seq37 Length=4974474 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 || || || ||||||||||| | || || ||||||||||| | ||| |||| | Sbjct 2662939 ATTCAGATTTTTGTCAAAACACTGACTGGGAAAACCATTACTTTAGAAGTGGAGAGTTCT 2662880 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | |||||| ||||| || || || || | || || || Sbjct 2662879 GATACTATAGACAATGTAAAAGCAAAGATCCAGGATAAGGAGGGAATTCCTTCTGACCAG 2662820 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||| || |||| |||||| |||| |||||||| Sbjct 2662819 CAGCGGCTCATCTTTGCTGGGAAGCAGCTAGAAGATGGAAGAACACTGGCTGATTACAAT 2662760 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| |||||||| || | ||| |||| Sbjct 2662759 ATTCAGAAAGAATCCACCCTCCACTTGGT 2662731 >seq22 Length=7127660 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || |||| || || || ||||| | ||| |||| Sbjct 3801808 ATGCAAATCTTTGTCAAGACACTAACTGGGAAGACGATTACTTTGGAAGTGGAGAGCTCT 3801867 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||||| ||||| || || | || |||||| Sbjct 3801868 GATACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATACCACCAGATCAA 3801927 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || || ||||||||||||| || || | || |||||||| Sbjct 3801928 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGAAGGACCCTAGCTGATTACAAT 3801987 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || ||||| | ||| |||| | | ||||| || || Sbjct 3801988 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTCCGTCTGCGTGGTGG 3802034 >seq97 Length=2389559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || || || || || || ||||| |||| | Sbjct 873956 ATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACTATAACTCTCGAAGTGGAGAGTTCT 873897 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || || ||||| || || | ||| || || Sbjct 873896 GATACAATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCAG 873837 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| || || || || || |||| | | || |||| ||||||||| Sbjct 873836 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGGACTTTGGCTGATTACAAC 873777 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| | ||| | || | | || ||||||||| Sbjct 873776 ATTCAAAAAGAATCTACACTCCACCTAGTTCTTCGGTTGAGAGGGGGAA 873728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412823471480279