Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8 161 2e-33 seq24 107 3e-17 >seq8 Length=10307871 Score = 161 bits (178), Expect = 2e-33 Identities = 223/310 (72%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 794355 GATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGA 794413 |||||| ||||| | |||| || |||| ||| |||||||||||||| | ||| || | Sbjct 4256143 GATCAACTCGTTTGAGAAAGTTAAGCCCGG-CATCAGGCCGCGCTTCTTCAACCAGAATA 4256201 Query 794414 TGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCT 794473 | |||||||| ||||| ||||| || || ||||||||| ||| || ||| || |||| Sbjct 4256202 TCGCACAGAAGCTGCCGGAGAAGAATATCCCCTCGACGCAGGCGAATGCGATCAGGCGCT 4256261 Query 794474 CGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCC 794533 | || || | || || || |||||| | | |||||||| || |||||| Sbjct 4256262 CCGCGAAGGATTCGGAACCGTC------GATCCATTGGAGGGCCCACTCGGCTTTTTTCG 4256315 Query 794534 TCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGA 794593 ||| |||| || || ||||| ||||| || ||| || ||||||| ||| ||||||| Sbjct 4256316 CCACGCAGGGGACGGTCTCGATTGCGCGGAACAGGCGGCTCTTCTCGGCCGAATCCTTGA 4256375 Query 794594 CGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGA 794653 ||| | || | | ||| ||| |||| ||||||||||| || || ||||| |||| Sbjct 4256376 TGTATGATTCCAACAAGAGGCTGTACATCTCGGAGTGGATGTTCTCAATAGCGATTTGGA 4256435 Query 794654 AGCCATAAAA 794663 | || ||||| Sbjct 4256436 AACCGTAAAA 4256445 Score = 98.7 bits (108), Expect = 2e-14 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| | |||||| ||||||||||| || | || ||||| || || || || Sbjct 4256452 GGCCTCGGAGATTTGGACTTCCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACC 4256511 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 ||| || ||||| ||||| || || || | || ||||| |||||| | | | || Sbjct 4256512 GTCAGAAGCAGCGAAGAAGGCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAG 4256571 Query 796269 CGAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 |||||| ||| | | || | ||| || || || ||||| ||||| ||||||| Sbjct 4256572 GATTTCCCAGT-GACGGAGATCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGG 4256630 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | ||||| || |||||||| |||||||| | | || | || ||||||| Sbjct 4256631 CTTCGGCTTTCTTGTACATTTCCCATATTTGGGGATATTGAATTGGGAACA 4256681 >seq24 Length=6575952 Score = 107 bits (118), Expect = 3e-17 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||| |||||||||||||| || || |||||| |||||| |||||| | | Sbjct 5364569 TGAACTTGGTGACAGCCTTGGTACCCTCAGATACAGCGTGCTTGGCCAATTCGCCAGGAA 5364628 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || |||||||||||||| || | | ||| || |||||| || Sbjct 5364629 GAACAAGACGAACAGCGGTCTGGATCTCCCGAGAGGTGATGGTAGGCTTCTTGTTGTAGC 5364688 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | | ||||| | ||| |||| |||||||||| ||| ||||| Sbjct 5364689 GAGCGAGCCTGGATGCCTCCTGGGCGAGCTTCTCGAAAATGTCGTTGATAAAGCTGTTCA 5364748 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| | ||| | |||| || | ||| ||||| || || || || |||||| Sbjct 5364749 TGATGCCCATGGCCTTGCTCGAGACCCCAATGTCAGGGTGGACTTGTTTCAGAACCTTG 5364807 Score = 104 bits (114), Expect = 4e-16 Identities = 169/238 (71%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| ||||| || ||||| |||||||| ||| | |||| ||| ||| | | | Sbjct 5536061 TTGGTGACAGCCTTTGTGCCCTCGGAGACGGCATGCTTAGCCAATTCACCGGGAAGAACG 5536002 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG---CGC 1485591 || || ||||||||||||||||| || | | ||| ||||| |||| || || || Sbjct 5536001 AGACGAACGGCGGTCTGGATCTCCCGAGAGGTGAT--TGTTG-GCTTCTTGTTGTAACGA 5535945 Query 1485592 GCCAGGCGGCCGGCCT-CGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 ||||| | ||||| | ||| ||| |||| ||||| |||| || |||||| Sbjct 5535944 GCCAGCCTCGAGGCCTCCTGTG-CGAGCTTCTCGAATATGTCATTGATGAAACTGTTCAT 5535886 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||| | || | ||||| || | || |||||||||||||| | ||||||| Sbjct 5535885 GATGCCCATGGCCTTACTCGAGATCCCGATATCCGGGTGCACCTGCTTCAACACCTTG 5535828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915863132456717