Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq97 100 2e-16 seq17 98.7 8e-16 seq143 91.5 1e-13 seq65 91.5 1e-13 seq37 89.7 4e-13 seq30 89.7 4e-13 seq50 87.8 1e-12 seq31 87.8 1e-12 >seq97 Length=2389559 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||||||||| || || | || || || ||||| ||| | || ||| ||| Sbjct 873729 AATGCAAATTTTTGTAAAGACGCTTACTGGAAAGACCATAACCCTTGAGGTTGAGAGCTC 873670 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | || ||| |||||| || || || || | ||| || | Sbjct 873669 A-GATACGATTGATAATGTCAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACC 873611 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || |||| ||| || || ||||| ||||| | || || |||| ||||| | Sbjct 873610 AGCAGAGGCTGATTTTTGCTGGAAAGCAGCTAGAGGATGGCAGGACCTTGGCTGACTATA 873551 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||| ||||||||||| ||||| |||| | ||| | ||||| || Sbjct 873550 ACATTCAGAAGGAGTCTACTTTGCATCTGGTTCTTAGACTTCGAGGAGG 873502 >seq17 Length=7869039 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || || || || ||| |||| || |||||||| ||| | || ||| ||| Sbjct 3557168 AATGCAGATATTCGTGAAGACTCTAACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTC 3557109 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | ||||| | | | | || || |||||| || ||||| || | || |||| Sbjct 3557108 G-GATACCATTGACAATGTGAAGGCGAAGATTCAGGACAAAGAGGGTATCCCACCAGATC 3557050 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || |||| ||| || || ||||| ||||| | || |||| || |||| Sbjct 3557049 AGCAGAGGCTCATTTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCTGATTACA 3556990 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||| || |||||||||||| ||||| ||||| | || | || || |||| Sbjct 3556989 ACATACAGAAGGAGTCTACGCTGCACTTGGTGCTCAGGCTTCGCGGTGGAA 3556939 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| |||||||| ||| |||| || ||||| || || | ||| ||| ||| Sbjct 3558080 AATGCAAATCTTTGTCAAGACTCTAACCGGAAAAACAATCACTCTTGAAGTTGAGAGCTC 3558021 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | || || ||| ||| ||||| || ||| | ||| || | Sbjct 3558020 T-GATACGATTGATAACGTCAAGGCAAAAATTCAGGATAAGGAGGGCATTCCCCCAGACC 3557962 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||| || || |||| ||| || || ||||| ||||| | || |||| || |||| Sbjct 3557961 AGCAAAGGCTAATTTTTGCCGGAAAGCAGCTCGAGGATGGTCGTACTTTGGCTGATTACA 3557902 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| || ||||||||||| ||||| |||| Sbjct 3557901 ACATCCAGAAGGAGTCTACCTTGCATCTGGT 3557871 >seq143 Length=1536321 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| ||||| || | || ||||| || || ||| | || ||| | Sbjct 384589 AATGCAGATTTTCGTCAAGACCCTTACCGGCAAGACTATCACCCTGGAGGTAGAGAGTTC 384530 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | ||||| ||||| || || || || | ||| ||| || Sbjct 384529 CGACACGATCGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 384470 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || |||||||| ||||| | | ||| |||| |||||||| Sbjct 384469 GCAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGCCGAACCTTGGCCGACTACAA 384410 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| ||||| || || | ||| ||||| || | |||| || || Sbjct 384409 CATTCAGAAGGAATCAACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 384362 >seq65 Length=3230173 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| |||||||| ||| |||| || ||||||||||| | || ||| | Sbjct 2676799 AATGCAAATCTTTGTCAAGACTCTAACCGGGAAAACCATTACTYTGGAGGTTGAGAGTTC 2676740 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || || ||||| || || ||||| | || ||||| Sbjct 2676739 TGATACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCTGATCA 2676680 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||| | ||| || || || || || || | | ||| |||| || || || Sbjct 2676679 GCAGAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGTAGGACACTGGCTGAYTAYAA 2676620 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| ||||| || || Sbjct 2676619 CATTCAGAAGGAATCCAC 2676602 >seq37 Length=4974474 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 || || |||||||||||||| | || || ||||||||||| | ||| |||| | Sbjct 2662939 ATTCAGATTTTTGTCAAAACACTGACTGGGAAAACCATTACTTTAGAAGTGGAGAGTTCT 2662880 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | |||||| |||||| ||||| || || | || || ||| Sbjct 2662879 GATACTATAGACAATGTAAAAGCAAAGATCCAGGATAAGGAGGGAATTCCTTCTGACCAG 2662820 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| || || | | |||| |||| || ||||| Sbjct 2662819 CAGCGGCTCATCTTTGCTGGGAAGCAGCTAGAAGATGGAAGAACACTGGCTGATTACAAT 2662760 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || || || || | ||| |||| Sbjct 2662759 ATTCAGAAAGAATCCACCCTCCACTTGGT 2662731 >seq30 Length=5940761 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||||||||||||||| ||| | || || || || || || | ||| ||| ||| Sbjct 3346613 AATGCAAATTTTTGTCAAGACTCTCACCGGAAAGACAATCACTCTTGAAGTTGAGAGCTC 3346554 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || | | | | || || ||||||| || || || ||| | ||| || | Sbjct 3346553 -CGACACGATTGACAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCCCCAGACC 3346495 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | || || | |||| ||| || || ||||| ||||| | | || |||| || |||| Sbjct 3346494 AACAAAGGTTGATTTTTGCTGGGAAGCAGCTTGAGGATGGAAGGACCCTGGCAGATTACA 3346435 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| || ||||||||||| |||||| |||| Sbjct 3346434 ACATCCAGAAGGAGTCTACCTTGCACCTGGT 3346404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || || | ||||| |||||||| || ||||| ||| ||| | Sbjct 3346156 ATGCAGATTTTTGTTAAGACCCTCACAGGGAAAACCATCACACTCGAAGTTGAGAGCTCG 3346097 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || || || ||| | || || || Sbjct 3346096 -GACACAATTGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCACCAGACCA 3346038 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || ||||||| ||| || || ||||||||||| | || | || |||||||| Sbjct 3346037 GCAAAGGCTTATTTTTGCTGGAAAGCAGCTGGAGGATGGACGGACTCTTGCAGACTACAA 3345978 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| |||||||| || Sbjct 3345977 CATTCAGAAGGAGTCCAC 3345960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | || || |||||||||||| | ||| ||| ||| Sbjct 3346384 ATGCAGATCTTTGTCAAGACTCTCACCGGAAAAACCATTACCCTTGAAGTTGAGAGCTCT 3346325 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || || ||| || || |||||| | || || || Sbjct 3346324 -GATACAATTGATAATGTGAAGGCGAAAATTCAGGACAAGGAAGGCATCCCACCAGACCA 3346266 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || |||||||| ||||| | ||| | || || ||||| Sbjct 3346265 GCAGAGGCTAATCTTTGCCGGGAAACAGCTCGAGGATGGTCGGACACTTGCTGATTACAA 3346206 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||||||||| |||| |||| | ||| | || ||||| Sbjct 3346205 TATCCAGAAGGAGTCTACCCTGCATCTGGTTCTTAGACTTCGTGGGGG 3346158 >seq50 Length=4141196 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || || ||| | || || || ||||| || | || |||| ||| Sbjct 1513559 ATGCAGATTTTCGTGAAGACTCTTACCGGTAAGACCATCACATTGGAGGTGGAGAGCTC- 1513501 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | | || || |||||| || || || || | || || || Sbjct 1513500 CGATACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCA 1513441 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || |||||||| ||||| | | || ||||||||||||| Sbjct 1513440 GCAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGCCGCACCTTGGCGGACTACAA 1513381 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||| |||||||| || | ||| |||| || | | || ||||||| Sbjct 1513380 CATTCAGAAGGAGTCCACCCTTCACTTGGTTCTGCGTCTACGTGGGGGAA 1513331 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| || || || ||||| ||||| ||| | || |||| ||| Sbjct 1513787 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTC- 1513729 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||| ||||| ||||| | ||| || || Sbjct 1513728 CGACACCATCGATAACGTGAAGGCTAAGATCCAAGATAAGGAAGGTATCCCCCCCGACCA 1513669 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| || |||| || || | || |||||||| Sbjct 1513668 GCAGAGGCTCATATTCGCCGGAAAGCAGCTCGAAGACGGCAGGACCCTAGCCGACTACAA 1513609 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| | ||| Sbjct 1513608 CATCCAGAAGGAGTCGACCCTCCACCTCGTG 1513578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 |||||||| || ||||| || | || ||||| ||||| ||| |||| || | ||| Sbjct 1514243 ATGCAAATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTCGAAAGCTC- 1514185 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| ||| | | || ||| ||||| || || || || | ||| || || Sbjct 1514184 CGACACTATCGACAACGTCAAAGCTAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCA 1514125 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||| ||||||| | |||| | || |||||||| Sbjct 1514124 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTAGAGGACGGCCGAACACTCGCTGACTACAA 1514065 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||| || || Sbjct 1514064 CATCCAGAAGGAATCGAC 1514047 >seq31 Length=5807843 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/205 (69%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| |||||||| ||| |||| || |||||||||||| | || ||| | Sbjct 4127517 AATGCAAATCTTTGTCAAGACTCTAACCGGGAAAACCATTACCCTGGAGGTTGAGAGTTT 4127576 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || || ||||| || || ||||| | || | ||||| Sbjct 4127577 TGATACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCTTGATCA 4127636 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATG-------GCGG 107727 |||||||||||| | ||| || || || || || || | | ||| || || | Sbjct 4127637 GCAGAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGTAGGACACTGGCTGACAGCTG 4127696 Query 107728 ACTACAACATTCAAAAGGAGTCTAC 107752 ||||||||||||| ||||| || || Sbjct 4127697 ACTACAACATTCAGAAGGAATCCAC 4127721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398859284696467