Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 3e-12 seq97 86.0 1e-11 seq65 86.0 1e-11 >seq1 Length=14325340 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || || |||||||| || |||||||||||||| |||||||| ||||||||||| || ||| Sbjct 9211796 AAGGAGGGCATTCCCCCTGATCAACAAAGACTAATTTTTGCTGGTAAACAATTGGAAGAT 9211737 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGAC 146227 | || | ||||||| || || ||||| |||||||| Sbjct 9211736 GGCCGTACTCTTGCAGATTACAACATCCAAAAGGAATCGAC 9211696 >seq97 Length=2389559 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || || | || || || || || || ||||||||| | || ||||| | | | Sbjct 873271 TGCAGATTTTTGTCAAGACCTTGACGGGGAAGACAATTACTCTGGAGGTAGAGAGCTCA- 873213 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || || || ||| || || || |||||||| ||||| Sbjct 873212 GATACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAG 873153 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || ||||||||||| || || || || || ||| | || || | ||||| || Sbjct 873152 CAGAGGCTCATTTTTGCTGGGAAGCAGTTGGAAGATGGACGCACTTTGGCCGATTACAAC 873093 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 ||||| || ||||| || | ||||| || Sbjct 873092 ATACAGAAGGAATCTACATTGCATTTGGT 873064 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | |||||||| || || ||| | || || || | | Sbjct 873955 TGCAAATCTTTGTCAAGACCCTCACAGGAAAGACTATAACTCTCGAAGTGGAGAGTTCTG 873896 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||||| ||| || || || || || || || || | Sbjct 873895 ATACAATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCAGC 873836 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || || ||| | || ||| | || || | ||||| || | Sbjct 873835 AAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGGACTTTGGCTGATTACAACA 873776 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| || |||| |||| | || || ||||| || Sbjct 873775 TTCAAAAAGAATCTACACTCCACCTAGTTCTTCGGTTGAGAGGGGG 873730 >seq65 Length=3230173 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || | || || ||||| || || |||| |||||| | | Sbjct 2676569 TGCAGATATTTGTCAAGACCCTTACTGGGAAAACCATCACACTTGAAGTAGAAAGTTCAG 2676510 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||| || || ||| || ||||| ||||| || |||| Sbjct 2676509 ACACCATTGACAATGTTAAGGCTAAGATTCAGGATAAGGAGGGCATCCCACCTGACCAAC 2676450 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||||||||| || ||||| | || ||| | | || || | ||||| || | Sbjct 2676449 AGAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGTCGTACCTTGGCCGATTACAACA 2676390 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || ||||| || |||| Sbjct 2676389 TTCAGAAGGAATCCACCCTCCA 2676368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786130993030760