Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq47 109 1e-18 >seq47 Length=4346018 Score = 109 bits (120), Expect = 1e-18 Identities = 116/150 (77%), Gaps = 5/150 (3%) Strand=Plus/Plus Query 304989 AAGG-TAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 |||| ||| |||||||| || ||||||| |||||||||| ||||| |||||| ||| Sbjct 2907575 AAGGCTAAGGAGGGTCGCATAAGAGGTAACTTAATGGGAAAGCGTGTCGATTTTTCAGCA 2907634 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA 305107 | | ||| |||||||||||| | |||| | || ||||||| |||||||| ||| | Sbjct 2907635 CGGACTGTCATCACACCTGATCCGACCATTAATATTGATGAATTGGGAGTTCC--TTGGA 2907692 Query 305108 --ATTGCTTTAAAACTAACATTTCCAGAGA 305135 ||||||||||| | |||| |||||||| Sbjct 2907693 GTATTGCTTTAAACTTGACATATCCAGAGA 2907722 Score = 84.2 bits (92), Expect = 5e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAA- 305388 ||||| ||||| | ||||| || || |||||||| || |||| || | | |||| Sbjct 2908094 GTTCTATTCAACCGACAACCTAGTCTTCACAAAATGTCCATTATGGGACACAGAATCAAG 2908153 Query 305389 AGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGA 305448 | ||| || | |||||| || || || | || | | | || |||||||| || Sbjct 2908154 ATTATGCCCTAC-TCGACATTCCGCTTGAACTTGTCTGTTACTTCTCCATATAATGCTGA 2908212 Query 305449 TTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||||||||||||| ||||| |||||||| ||||||||| Sbjct 2908213 TTTTGATGGAGATGAGATGAACATGCATGTTCCTCAATCA 2908252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186758012641483