Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq17 93.3 3e-14 seq8 89.7 3e-13 seq6 89.7 3e-13 seq30 87.8 1e-12 seq65 84.2 1e-11 seq22 84.2 1e-11 >seq17 Length=7869039 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || || ||| || |||||||||||||| | | ||||| | || || Sbjct 3556958 CACCAAGTGCAGCGTAGACTCCTTCTGTATGTTGTAATCAGCCAAGGTGCGACCATCCTC 3557017 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || |||||||||||||| | | |||||||||| | || | ||| |||||||| Sbjct 3557018 GAGCTGCTTTCCGGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCTTTGTCCTG 3557077 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTT 33717 ||| ||| ||| |||| ||| | ||| || | | | || || || | ||||| ||| Sbjct 3557078 AATCTTCGCCTTC-ACATTGTCAATGGTATC-CGAGCTCTCAACCTCCAGGGTGATGGTT 3557135 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || |||| || || || || |||||||| Sbjct 3557136 TTCCCAGTTAGAGTCTTCACGAATATCTGCAT 3557167 >seq8 Length=10307871 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | ||||| || ||||| || || || || |||||||| | Sbjct 8849564 CCTCCTCTGAGTCGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 8849505 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || ||||| || || || | || |||||||| | || Sbjct 8849504 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCCGCGAAGATAAGGCGTTGCTGATCGGGAGGT 8849445 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || ||| |||| ||| ||| | |||||| ||||| || Sbjct 8849444 ATGCCCTCTTTGTCTTGGATCTTCGTCTTCA-CATTGTCGATGGTGTCTGAGGATTCAAC 8849386 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || |||| |||||||| ||||||||||| Sbjct 8849385 CTCAAGGGTTATGGTCTTCCCGGTTAGGGTTTTTACGAAGATCTGCAT 8849338 >seq6 Length=10738081 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| ||| || || ||||| || || |||||||||| Sbjct 270638 CCTCCTCTGAGACGAAGAACCAGATGAAGCGTCGATTCTTTCTGGATATTGTAATCGGCC 270697 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || ||||| || || || | || |||||||| | || Sbjct 270698 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCCGCGAAGATAAGGCGTTGCTGATCGGGAGGG 270757 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || ||| |||| ||| ||| | |||||| || || || Sbjct 270758 ATGCCCTCTTTGTCCTGGATCTTCGCCTTCA-CATTGTCGATGGTGTCTGAGGACTCAAC 270816 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || |||| |||||||| ||||||||||| Sbjct 270817 CTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTTACGAAGATCTGCAT 270864 >seq30 Length=5940761 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/243 (69%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 33514 AAATCGTCA---CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 ||||||||| || || | | ||| | || | ||| || ||| |||||| || ||| Sbjct 3345462 AAATCGTCAAGACCGCCACGAAGACGGAGGACAAGATGAAGGGTGGACTCTTTCTGAATG 3345521 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | || ||||| | || || | ||| || |||||||| || | | |||| Sbjct 3345522 TTGTAGTCCGCAAGGGTGCGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGCCTCTGC 3345581 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| | || | || |||||||| ||| || || ||||| ||| | ||| || Sbjct 3345582 TGATCAGGTGGGATCCCCTCTTTGTCCTGAATCTTAGCCTT-AACATTGTCTATGGTATC 3345640 Query 33690 ---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| ||||| || | |||||||| || ||||| || || || || |||||||| Sbjct 3345641 AGAGCTC---TCCACCTCCAGTGTGATCGTCTTCCCTGTCAAGGTCTTCACGAAGATCTG 3345697 Query 33747 CAT 33749 ||| Sbjct 3345698 CAT 3345700 >seq65 Length=3230173 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||| || | |||| ||| || ||| ||| || || ||||||||||| | Sbjct 2676800 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 2676859 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||| ||| || || ||||| || | |||||||| || | || Sbjct 2676860 AAGGTTCGGCCATCCTCCAGTTGCTTACCAGCAAAGATAAGCCGCTGCTGGTCAGGTGGG 2676919 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| | | |||| ||| | |||||| ||| || Sbjct 2676920 ATTCCTTCCTTGTCTTGGATTTT-GGCCTTGACATTGTCAATAGTGTCGGAGCTTTCAAC 2676978 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 2676979 CTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT 2677026 >seq22 Length=7127660 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||| || | |||| ||| || ||| ||| || || ||||||||||| | Sbjct 3801404 CCACCCCTCAATCGAAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 3801345 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || || | |||||| || ||||| || | |||||||| || | || Sbjct 3801344 AAGGTTCGGCCATCCTCTAGTTGTTTACCAGCAAAGATAAGCCGCTGCTGGTCAGGGGGG 3801285 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| | | |||| ||| | |||||| ||| || Sbjct 3801284 ATTCCTTCCTTGTCTTGGATTTT-GGCCTTGACATTGTCAATAGTGTCGGAGCTTTCAAC 3801226 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || ||||| | || || ||||| |||||||| Sbjct 3801225 CTCAAGGGTGATGGTCTTGCCTGTAAGAGTCTTAACAAAAATCTGCAT 3801178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328689566093760