Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq3603 607 2e-169 seq199 147 7e-31 >seq3603 Length=163330 Score = 607 bits (672), Expect = 2e-169 Identities = 717/961 (75%), Gaps = 10/961 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| ||||| || ||||||| || | || ||| || | Sbjct 1419 AACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1361 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || |||||||| |||||||| ||||| ||||| || |||||||| || || || Sbjct 1360 TTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1301 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || |||||||||||||| || || || || ||| | |||| | Sbjct 1300 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 1241 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || ||||| | ||||| || || || |||||||| || |||||||| Sbjct 1240 TTCTGCA--GCTATCGGTTTGCACTTTTATCCGATCTGGGAAGCGGCATCCGTTGATGAA 1183 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | ||||| || || || | |||| | || | |||||| | |||| | | Sbjct 1182 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1123 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||||||||| || || ||||||||||| | || || || ||| | ||||||||| | Sbjct 1122 TGTTACATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 1063 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| |||||||| || |||| || ||||| | ||||||| |||| Sbjct 1062 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGG 1004 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || |||||||| |||| ||||||| | || ||||| ||||| ||||||| |||| | Sbjct 1003 TCAAGGAAGCTTCTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGAT 944 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || ||||| || |||||||| || |||||| | ||||| ||||| Sbjct 943 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 884 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT-G 20126 ||||||||| || || ||||||||||| ||||| ||||| |||| || | || | || Sbjct 883 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTAA 825 Query 20127 TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || |||||| | ||| | || | ||||||| || || ||||| |||| Sbjct 824 TCAGGGAAACCACTGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAG 765 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || ||||| |||||||| ||||||||||| ||||| || |||||||||||||| ||| Sbjct 764 AAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 705 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306 |||||||||| |||||| |||| |||||||| ||||| ||||| || ||||| || | Sbjct 704 GTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCT 645 Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366 |||| |||| || || | || ||||| || || || || |||||||| || |||| Sbjct 644 GGTTTACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 585 Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426 | || | | |||| | |||||||| ||| | ||||||||||| ||| |||| |||| Sbjct 584 AATCTGTAGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTG 525 Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTG 20486 |||| || || | || || ||||||||||| |||||||| |||||||| || ||||| | Sbjct 524 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAG 465 Query 20487 C 20487 | Sbjct 464 C 464 >seq199 Length=1013994 Score = 147 bits (162), Expect = 7e-31 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20261 CGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTG 20320 |||||| ||| |||||||| ||||| ||||| || ||||| || ||||| |||| || Sbjct 992614 CGTTCTTTACGTTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTA 992555 Query 20321 GGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGAC 20380 || | || ||||| || || || || |||||| | || ||||| || | | ||| Sbjct 992554 GGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGAC 992495 Query 20381 AACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTT 20440 | | |||||||| ||| | |||||||||| ||| |||| || ||||| || || | Sbjct 992494 AGTCAAGGTCGTGTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATG 992435 Query 20441 GAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 || || ||||||||||| |||||||| |||||||| | ||||| || Sbjct 992434 GAAGTTATGCATGAACGTAATGCTCACAACTTCCCTTTAGACCTAGC 992388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148822432266774