Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq3603 542 8e-150 seq199 158 4e-34 >seq3603 Length=163330 Score = 542 bits (600), Expect = 8e-150 Identities = 704/965 (73%), Gaps = 16/965 (2%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| ||||| || ||||||| || | || ||| || | Sbjct 1419 AACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1361 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || |||||||| |||||||| || || ||||| || |||||||| || || || Sbjct 1360 TTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1301 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| |||| ||| || ||||||||||| || || || || ||| | | || | Sbjct 1300 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 1241 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || ||||| | ||||| || || || |||||||| || |||||||| Sbjct 1240 TTCTGCA--GCTATCGGTTTGCACTTTTATCCGATCTGGGAAGCGGCATCCGTTGATGAA 1183 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | ||||| || || || | |||| | || | |||||| | |||| || | Sbjct 1182 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1123 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||||||||| || || ||||||||||| | || || || ||| | || |||||| | Sbjct 1122 TGTTACATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 1063 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | |||||||| | ||| Sbjct 1062 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGT 1003 Query 29077 CAAGG----TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACAT 29132 ||||| |||| | || | |||||| | || || || || || ||||||| ||| Sbjct 1002 CAAGGAAGCTTCTCT----GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCAT 947 Query 29133 GCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGC 29192 | | || ||||| || || || ||||| || |||||||| || |||||| | || || || Sbjct 946 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGC 887 Query 29193 TGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCT 29252 ||| || ||||| ||||| ||||| ||||| ||||| ||||| | || || || | | | Sbjct 886 TGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTT 828 Query 29253 TGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAG 29311 | | | || || |||||| | ||| || | ||||||| || || ||||| | Sbjct 827 TAATCAGGGAAACCACTGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGG 768 Query 29312 AAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATG 29371 |||| |||||||| |||||||| ||||| ||||| ||||| || |||||||||||||||| Sbjct 767 AAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 708 Query 29372 CTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 29431 || |||||| ||| |||||| |||| |||||||| ||||| ||||| || ||||| | Sbjct 707 CTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTA 648 Query 29432 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTA 29491 | ||||| |||| || || | || ||||| || || || || ||||| || || | Sbjct 647 TCTGGTTTACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCA 588 Query 29492 ACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATC 29551 |||| || | | |||| | |||||||| ||||| |||||||||||| || |||| | Sbjct 587 ACCAATCTGTAGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACC 528 Query 29552 GCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATC 29611 | |||||||| || | ||||| |||||||| ||||||||||| |||||||| || || | Sbjct 527 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACC 468 Query 29612 TGGCT 29616 | ||| Sbjct 467 TAGCT 463 >seq199 Length=1013994 Score = 158 bits (174), Expect = 4e-34 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29389 CGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTG 29448 |||||| ||| |||||||| ||||| ||||| || ||||| || ||||| |||| || Sbjct 992614 CGTTCTTTACGTTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTA 992555 Query 29449 GGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGAC 29508 || | || ||||| || || || || ||||| | || ||||| || | | ||| Sbjct 992554 GGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGAC 992495 Query 29509 AACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTT 29568 | | |||||||| ||||| ||||||||||| || |||| || |||||||| || | Sbjct 992494 AGTCAAGGTCGTGTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATG 992435 Query 29569 GAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCTAC 29618 ||||| |||||||| ||||||||||| |||||||| | || || ||||| Sbjct 992434 GAAGTTATGCATGAACGTAATGCTCACAACTTCCCTTTAGACCTAGCTAC 992385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146659324820638