Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq3603 636 5e-178 seq199 167 7e-37 >seq3603 Length=163330 Score = 636 bits (704), Expect = 5e-178 Identities = 736/982 (75%), Gaps = 10/982 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || ||||||||||| || || ||||| || || Sbjct 1446 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1387 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || |||||||||||||||||||| | Sbjct 1386 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1329 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||||||||||| Sbjct 1328 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACA 1269 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | ||| || ||||| | ||||| || || Sbjct 1268 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCA--GCTATCGGTTTGCACTTTTATCC 1211 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 || |||||||| || ||||||||||| | ||||| || || || | |||| | Sbjct 1210 GATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAAT 1151 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | |||||| | |||| || | ||||||||| || || ||||||||||| | Sbjct 1150 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAATGGGAACTTAGTTT 1091 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || || || ||||| ||||||||| |||||| || |||||||||||||| || || | Sbjct 1090 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 1031 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 ||| || ||| | |||| ||| |||||||||| ||| || | ||||||| | || Sbjct 1030 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTCTAGG 971 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 || |||||| ||||||| |||| |||||||||||||||| || |||||||| ||||| Sbjct 970 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 911 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 ||| || |||||| | ||||| |||||||| |||||||| || ||||| ||||| ||||| Sbjct 910 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 851 Query 19320 CGGTTCGCTTGTTACGTCCTCGCTT-GTGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378 ||||| |||| || | || | || | | ||||| |||||| | | |||| || Sbjct 850 TGGTTC-CTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAATCTGCTAATG 792 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 | || |||| || || ||||| ||||| |||||||| || || ||||||||||| |||| Sbjct 791 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATT 732 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || | || ||||| || || ||||||||| |||||| |||||||||| Sbjct 731 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCC 672 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 | |||||||||||||| || || || |||||| | || | || | ||||||||||| | Sbjct 671 TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACCATGGCTT 612 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618 ||||| | ||||| || || || ||||| || | |||||| | |||||||| ||| Sbjct 611 TCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGTGTAATTA 552 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678 | ||||||||||| ||| |||| ||||||||||| || | || || ||||| ||||||| Sbjct 551 ACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 492 Query 19679 ATGCTCATAACTTCCCACTTGA 19700 ||||||| |||||||| || || Sbjct 491 ATGCTCACAACTTCCCTCTAGA 470 >seq199 Length=1013994 Score = 167 bits (184), Expect = 7e-37 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 19480 CGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTT 19539 |||||| ||| |||||| | |||||||||||||| || || || |||||| | || | Sbjct 992614 CGTTCTTTACGTTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTA 992555 Query 19540 GGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGAC 19599 || | ||||||||||| |||||| | ||||| || | || ||||| || | ||||| Sbjct 992554 GGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGAC 992495 Query 19600 AACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTT 19659 | | |||||||| ||| | |||||||||| ||| |||| || |||||||| || | Sbjct 992494 AGTCAAGGTCGTGTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATG 992435 Query 19660 GAGGTAATGCACGAACGTAATGCTCATAACTTCCC 19694 || || ||||| |||||||||||||| |||||||| Sbjct 992434 GAAGTTATGCATGAACGTAATGCTCACAACTTCCC 992400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141142760860374