Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq50 91.5 1e-13 seq66 84.2 2e-11 seq30 82.4 7e-11 >seq50 Length=4141196 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||||| || | | | ||||| || |||||||||||||| || ||| || | Sbjct 1513345 CGCAGAACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCA 1513404 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || |||||||| || | |||| || | ||| || ||||| || || || || || Sbjct 1513405 TCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTG 1513464 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | ||||||| |||||| || | || | Sbjct 1513465 TCCTGAATCTTGGCCTTCACATTGTCGATGGTATCGGAGCTCTCCACCTCCAATGTGATG 1513524 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || ||||| || | |||||||||||| Sbjct 1513525 GTCTTACCGGTAAGAGTCTTCACGAAAATCTGCAT 1513559 >seq66 Length=3234583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| | || | ||||||||||||||| || | | Sbjct 1444526 GACTCCTTTTGGATGTTGTAGTCGGCTAGTGTTCTTCCATCTTCGAGCTGTTTTCCAGCA 1444585 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || ||||||||||| || ||||| || ||||| || || ||| || |||| Sbjct 1444586 AAAATGAGACGCTGTTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTGGCCTTCACA 1444645 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | || || || || | || | ||| || || || || ||||| Sbjct 1444646 TTATCGATAGTGTCCGACGATTCAACCTCTAGGGTTATCGTCTTCCCTGTTAGGGTTTTC 1444705 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 1444706 ACGAAGATTTGCAT 1444719 >seq30 Length=5940761 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| ||| | | | ||||| || || || ||||| || | || || ||| || Sbjct 3346175 AACCAGATGCAGGGTAGACTCCTTCTGGATATTGTAATCAGCAAGTGTCCGACCATCCTC 3346234 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||| |||| | ||||||| | ||| || ||||| || |||||||| || || Sbjct 3346235 GAGCTGTTTCCCGGCAAAGATTAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTG 3346294 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| |||| | || | ||||| | ||| ||||| | || | ||||| Sbjct 3346295 AATTTTCGCCTTCACATTATCAATTGTATCAGAGCTCTCAACTTCAAGGGTAATGGTTTT 3346354 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || | || |||||||| Sbjct 3346355 TCCGGTGAGAGTCTTGACAAAGATCTGCAT 3346384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476589734623080