Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08]
3,603 sequences; 804,647,751 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq97 98.7 8e-16
seq22 82.4 6e-11
>seq97
Length=2389559
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| |||||||| || || ||||| || ||||| ||||| |||| ||| |
Sbjct 873272 ATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACAATTACTCTGGAGGTAGAGAGCTCA 873213
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | ||||| ||| ||| ||||| || || | || ||||||
Sbjct 873212 GATACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAG 873153
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|| ||||| |||| ||| || || || || |||||| ||| ||| ||||||||||
Sbjct 873152 CAGAGGCTCATTTTTGCTGGGAAGCAGTTGGAAGATGGACGCACTTTGGCCGATTACAAC 873093
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
||||| || ||||||||| | ||||| ||
Sbjct 873092 ATACAGAAGGAATCTACATTGCATTTGGT 873064
>seq22
Length=7127660
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 106254 TTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAA 106313
||| | ||||| ||||||||||| || | || ||||||||||| ||| | || |||
Sbjct 3801172 TTACAGATGCAGATTTTTGTTAAGACTCTTACAGGCAAGACCATCACCCTTGAGGTTGAA 3801231
Query 106314 CCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTT 106373
| ||| || ||| | | || || ||||| ||||| ||||| | ||| |
Sbjct 3801232 AGCTCCGACACTATTGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCT 3801291
Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433
|| || || ||||||| | ||| || |||||| |||| ||| ||| ||| |||
Sbjct 3801292 GACCAGCAGCGGCTTATCTTTGCTGGTAAACAACTAGAGGATGGCCGAACCTTGGCAGAT 3801351
Query 106434 TACAACATACAAAAAGAATCTACACTACAT 106463
|||||||| || || || || || || |||
Sbjct 3801352 TACAACATCCAGAAGGAGTCCACCCTCCAT 3801381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402311933078624
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |