Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8 224 1e-52 seq24 86.0 9e-11 >seq8 Length=10307871 Score = 224 bits (248), Expect = 1e-52 Identities = 367/522 (70%), Gaps = 10/522 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | || | | ||||||||||||||| | |||| |||| |||||||| Sbjct 4256681 TGTTCCCAATTCAATATCCCCAAATATGGGAAATGTACAAGAAAG-CCGAAGCCTCCTTC 4256623 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||| ||||| || || || ||| | || | | ||| |||||| || | | | Sbjct 4256622 TGGACTGCCGAAGAAGTTGATCTCTCCCAAGATCTCCGTC-ACTGGGAAATCCTAACCCA 4256564 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 |||||| || ||||| | || || || ||||| || ||| || || || || | Sbjct 4256563 TGACGAGAAACACTTCATTACTCATGTACTGGCCTTCTT-CGCTGCTTCTGACGGTATTG 4256505 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | ||| ||||| || | || || ||||| || |||||| | | ||||| ||| | Sbjct 4256504 TTCTCGAAAACCTCGCTGCTCGGTTCATGAAGGAAGTCCAAATCTCCGAGGCCCGTGCAT 4256445 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 ||||||| ||||| ||||| || || ||||||||||| || | ||| ||| || | | Sbjct 4256444 TTTACGGTTTCCAAATCGCTATTGAGAACATCCACTCCGAGATGTACAGCCTCTTGTTGG 4256385 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | | ||| ||||||| ||| ||||||| || ||| || ||||| ||||| || || | Sbjct 4256384 AATCATACATCAAGGATTCGGCCGAGAAGAGCCGCCTGTTCCGCGCAATCGAGACCGTCC 4256325 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | ||| |||||| ||||| ||||| | | |||||| || || | | Sbjct 4256324 CCTGCGTGGCGAAAAAAGCCGAGTGGGCCCTCCAATGGATCGAC-----GGTTCCGAATC 4256270 Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| || ||||| || ||| || ||| |||||||||| || || ||||| ||||| || Sbjct 4256269 CTTCGCGGAGCGCCTGATCGCATTCGCCTGCGTCGAGGGGATATTCTTCTCCGGCAGCTT 4256210 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| || || || ||| | |||||||||||||| ||||| || Sbjct 4256209 CTGTGCGATATTCTGGTTGAAGAAGCGCGGCCTGATGCCGGG 4256168 >seq24 Length=6575952 Score = 86.0 bits (94), Expect = 9e-11 Identities = 160/227 (70%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | |||||||||||||| | || || ||| || | ||| ||||| Sbjct 5535828 CAAGGTGTTGAAGCAGGTGCACCCGGATATCG---GG--ATC-TCGAGTAAGGCCATGGG 5535881 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCG-AGGCCGGTCGCC 725034 ||||||||| || |||| ||||| |||| ||| ||| | ||||| | | Sbjct 5535882 CATCATGAACAGTTTCATCAATGACATATTCGAGAAGCTCG-CACAGGAGGCCTCGAGGC 5535940 Query 725035 TGGCGCGCTCCAACAAGC-GCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||| || | ||||||| || | || ||| | | || ||||||||||||||||| || Sbjct 5535941 TGGCTCGTTACAACAAGAAGCCA-ACAATCACCTCTCGGGAGATCCAGACCGCCGTTCGT 5535999 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | | | ||| ||| |||| | ||| ||||||||||||||||| Sbjct 5536000 CTCGTTCTTCCCGGTGAATTGGCTAAGCATGCCGTCTCCGAGGGCAC 5536046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177463684027686