Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq3603 612 2e-170 seq199 140 4e-28 seq162 138 1e-27 seq370 134 2e-26 seq49 105 8e-18 seq9 102 1e-16 seq120 98.7 1e-15 >seq3603 Length=163330 Score = 612 bits (678), Expect = 2e-170 Identities = 717/966 (74%), Gaps = 2/966 (0%) Strand=Plus/Minus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 ||||| || || | || |||||||| || ||||||| || || | ||| | |||||| Sbjct 1419 AACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1360 Query 177936 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 177994 ||||| || || | |||||| | |||||||| || || || || || || || ||||| Sbjct 1359 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1301 Query 177995 ACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 178054 ||| || |||| || || | ||||| ||||| || ||||||||||| || |||| | Sbjct 1300 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 1241 Query 178055 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 178114 ||| || || ||| | ||||| ||||| ||||||||||| ||||| ||||||| || Sbjct 1240 TTCTGCAGCTATCGGTTTGCACTTTTATCCGATCTGGGAAGCGGCATCCGTTGATGAATG 1181 Query 178115 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGC 178174 | | || || |||||||||| |||| | || | |||||| | ||||| | | Sbjct 1180 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1121 Query 178175 ATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 178234 |||||||| ||||| ||||||||| | |||| | |||||||| || ||||| ||| Sbjct 1120 TTACATGGGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 1061 Query 178235 AGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCA 178294 ||||| || ||||| || ||||| || | || || ||| || |||| || | ||||| Sbjct 1060 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCA 1001 Query 178295 AGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGT 178354 ||| || ||||| | ||||| || || ||||||||||| ||||||| |||| |||| Sbjct 1000 AGGAAGCTTCTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 941 Query 178355 TTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGT 178414 ||||| || || |||||||| || |||||||| || |||||||| ||||| || ||||| Sbjct 940 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 881 Query 178415 ATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCG 178474 |||||| || || || |||||||| ||||| ||||| ||||| || ||| | | | Sbjct 880 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTAATCAG 821 Query 178475 TGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC 178534 ||||| ||||||| ||||| || | ||||| | ||||| ||||| ||||| || Sbjct 820 GGAAACCACTGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 761 Query 178535 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATT 178594 || || ||||| || || ||||| || || || || |||||||||||||||||| || Sbjct 760 TTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 701 Query 178595 CAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178654 |||||| || ||||| | || |||||||| || || ||||||||||| || |||||||| Sbjct 700 CAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 641 Query 178655 CACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714 || || | || | ||||||||||| || ||||| ||||| ||||| |||||||| || Sbjct 640 TACTGCTTTAGGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 581 Query 178715 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178774 | | ||| | ||||| ||||| | ||||| ||||| || | |||||||||| Sbjct 580 TGTAGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAA 521 Query 178775 TCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 178834 || || |||||||| ||||| || || || || ||||||||||| || || || || || Sbjct 520 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 461 Query 178835 AGCTGA 178840 | ||| Sbjct 460 TGTTGA 455 Score = 477 bits (528), Expect = 1e-129 Identities = 710/1002 (71%), Gaps = 4/1002 (0%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || || || ||||| |||||||| || || | || Sbjct 37060 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 37119 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| | || | || |||||| | ||||| ||| | ||||| || | Sbjct 37120 TTCCTTGTGCCTATTTCGCTTTAGGAGGTTGGTTCACTGGTACAACCTTTGTAACTTCAT 37179 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTA-CGGCAGCT 179411 |||| ||||| || | |||||||||||| | || ||| || ||||||| | || || Sbjct 37180 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCCGCA 37238 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || || || |||||| || | | | |||||| | | ||||| ||||||||||| | Sbjct 37239 GTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTATTACTACTATGGGGTCCTGAAGCA 37298 Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 || || |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 37299 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCAT 37358 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 179590 || || |||| | || ||||||||| | | ||||| ||||||||||| ||| | Sbjct 37359 GGCGCTTTCGGATTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATCTGTTCAA 37418 Query 179591 TATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTT 179650 | | | ||||| ||||| || || || |||| ||| |||||||| || || ||| || Sbjct 37419 TTGC-GCCCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 37477 Query 179651 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710 ||| || ||||| | || ||||| |||||| || ||||| |||||||| || || Sbjct 37478 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGC 37537 Query 179711 GATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCA 179770 || || | ||| | || ||| | || || || || || |||||| | ||||| || || Sbjct 37538 TATATTTCGATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCA 37597 Query 179771 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTAC 179830 ||||||||||||||| || || | || | || ||||| | ||||| ||||| | ||| Sbjct 37598 TATGATGGGAGTTGCCGGCGTATTGGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTAC 37657 Query 179831 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 179890 ||||| ||||| || | |||||||| || |||||||| || || ||| | | Sbjct 37658 CGTAGAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCC 37717 Query 179891 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 179950 || || | |||||||||||||| |||||||| || |||||||| ||||| || ||||| Sbjct 37718 AACTCAAGCTGAAGAGACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTT 37777 Query 179951 CGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 180010 || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 37778 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 37837 Query 180011 GGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 180070 ||| |||||| || |||| | | ||||| ||||| ||||| ||||| || || Sbjct 37838 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGA 37897 Query 180071 TTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAA 180130 ||||| ||||| ||| | ||||| |||||||| || ||||| || |||||||| || Sbjct 37898 CTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACTAA 37957 Query 180131 GAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGA 180190 || ||||| | || ||||| | ||||| ||| |||| | ||||| || ||||| Sbjct 37958 AAATATTCTCTTAAACGAAGGGATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGA 38017 Query 180191 GTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 | ||||||| || || ||||| ||| | || || || Sbjct 38018 AAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 38059 >seq199 Length=1013994 Score = 140 bits (154), Expect = 4e-28 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 178617 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 178676 |||||||| || || ||||||||||| || |||||||| || || | || | |||||| Sbjct 992602 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACC 992543 Query 178677 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGT 178736 ||||| || ||||| ||||| ||| | |||||||| || | | ||| | ||||| ||| Sbjct 992542 ATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGT 992483 Query 178737 GTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCAC 178796 || | ||| | ||||| || | ||||||| || || || |||||||| ||||| Sbjct 992482 GTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATGGAAGTTATGCAT 992423 Query 178797 GAGCGCAACGCGCACAACTTCCC 178819 || || || || ||||||||||| Sbjct 992422 GAACGTAATGCTCACAACTTCCC 992400 >seq162 Length=1386390 Score = 138 bits (152), Expect = 1e-27 Identities = 222/319 (70%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 179851 AAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTT 179910 ||||||| || |||||||| || || ||| || | | || | ||| ||| || Sbjct 711978 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAATCCAATTCAAGCTGAACAGAATT 712037 Query 179911 ATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACA 179970 |||| ||||||||||| | ||||| ||||| || ||| | || ||||| |||| || | Sbjct 712038 ATTCAATGGTCACTGCTGATCGCTTTTGGTCCCAAATCCTTGGGATTGCTTTTTACAATA 712097 Query 179971 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 180030 | || ||| | | ||| || ||||| ||||| | || | ||| |||||| || Sbjct 712098 AACGTTGGTTACGTTTCTTTATGTTATTTGTATCAGTAACCGGTTTATGGATGAGTGCTC 712157 Query 180031 TTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCA 180090 |||| | ||||| |||| ||||| ||||| || || ||||| ||||| || Sbjct 712158 TTGGAGCAGTCGGTCTGACTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATTC 712217 Query 180091 GAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAG 180150 | |||||||||||||| | ||||| | |||||||| || || ||||| | || |||| Sbjct 712218 GTGCAGCAGAAGATCCTAAATTTGAAATTTTCTACACTAAAAATATTCTCTTAAACGAAG 712277 Query 180151 GACTACGTGCATGGTTGGC 180169 | | ||| | ||| |||| Sbjct 712278 GGATTCGTCCTTGGATGGC 712296 >seq370 Length=242655 Score = 134 bits (148), Expect = 2e-26 Identities = 202/285 (71%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 179487 CGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTC 179546 || ||||| ||| | || || || |||| ||| || |||||||| || | |||| | Sbjct 138072 CGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTCCATGGCDCTTTCGGATTA 138013 Query 179547 ATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGTATCAGACCTTACAA 179605 || ||||||||| | | ||||| ||||||||||| ||| || | | ||||| || Sbjct 138012 ATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATCTG-TTCAATTGCGCCCTTATAA 137954 Query 179606 TGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTT 179665 ||| | || || |||| ||| |||||||| || || ||| ||||| || ||||| | Sbjct 137953 TGCATTCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACT 137894 Query 179666 GGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTT 179725 || ||||| |||||| || ||||| |||||||| || || || || | ||| | Sbjct 137893 AGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCAT 137834 Query 179726 GCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCA 179770 || ||| | || || || || || |||||| | ||||| ||||| Sbjct 137833 CCTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTCCA 137789 >seq49 Length=4165818 Score = 105 bits (116), Expect = 8e-18 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 179865 GCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 179924 |||||||| || || ||| | | || || | |||||||||||||| |||||||| Sbjct 1498962 GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAGACTTATTCAATGGTCACC 1498903 Query 179925 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCAT 179984 || |||||||| ||||| || ||||| || |||| ||||| || || | ||| | ||| Sbjct 1498902 GCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAAYGTTGGTTACAT 1498843 Query 179985 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 180021 || || ||||| ||||| || || | ||| |||||| Sbjct 1498842 TTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGA 1498806 >seq9 Length=10250128 Score = 102 bits (112), Expect = 1e-16 Identities = 181/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 179648 TTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGC 179707 |||| | || ||||| | || ||||| |||||| || || || |||||||| || Sbjct 5987775 TTTCTTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGC 5987834 Query 179708 GGCGATCT--TCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCC 179765 || || | | | ||| | || ||| | || || || || || |||||| | ||||| Sbjct 5987835 AGCTATATATTTCGATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCA 5987894 Query 179766 TTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGA 179825 || ||||||||||||||||| || || | || | | ||||| | ||||| ||||| Sbjct 5987895 TTTCATATGATGGGAGTTGCCGGCGTATTGGGTGCTRCTCTGCTATGCGCTATTCATGGT 5987954 Query 179826 GTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTT 179885 | ||| ||| | ||||| || | ||||||| || |||||||| || || ||| Sbjct 5987955 GCTACCGTAAAAAATACTTTATTCAAAGATGGCGATGGTGCAAATACATTCCGTGCTTTT 5988014 Query 179886 GATTCGACACAGGAAGAAGAGACT 179909 | | || || | ||||||||| Sbjct 5988015 AAGCCAACTCAAAATGAAGAGACT 5988038 >seq120 Length=1927911 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 179598 CCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATC 179657 ||||| || || ||||| || | || ||| |||| ||| || || ||| ||||| || Sbjct 1770651 CCTTATAACGCAATTGCATTCTTTGTTCCAATTGTTGTTTTTGTTTTTGTATTCCTGATT 1770710 Query 179658 TATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTC 179717 ||||| | || ||||| |||||| || ||||| |||||||| || || || || Sbjct 1770711 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTT 1770770 Query 179718 AGGTTCTTGCTGTTCCT-TCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGAT 179776 | ||| | || || | | |||||||| | || || ||| | ||||| || |||||||| Sbjct 1770771 CGATTCATCCTCTTATTCTAAGGGTTTC-ATAATTGAACGTTGAACCCATTTCATATGAT 1770829 Query 179777 GGGAGTTG 179784 |||||||| Sbjct 1770830 GGGAGTTG 1770837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605982306842640