Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq257 140 4e-28 seq27 86.0 9e-12 >seq257 Length=623575 Score = 140 bits (154), Expect = 4e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||||||||| | || | ||||||| ||| |||| | |||||| |||| |||||| Sbjct 424937 TCCTCCCTGATCAACATAGCGAGCAGTGTCATTGAAGACACGCAGCATTGGAACAATACC 424878 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| |||| ||||| | | || ||||||||| || ||| Sbjct 424877 ATTGGATGTCCCATTTGTACCACAAATGTAACTGCTAGTGGCTCGAATATTATGAACAGA 424818 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||| || || ||| ||| | |||||| ||||| || |||||||| Sbjct 424817 AACACCAATTCCACCAGCAGATTTGCTGATCACAGCACACTCCTTCAAGGTATCATATAT 424758 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| || ||||||||| ||||| Sbjct 424757 TCCCTCGATACTATCATCTTTCATG 424733 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || ||||| || | || ||||| || ||||||||||| | || | || || Sbjct 424612 AGTCCCAGCATTGAAGAGAGTTGGAGAGGCATGAGTGAACCAACGCTGTGACATCAAATG 424553 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||| ||||| || || || || || || ||||| | || || | |||||| Sbjct 424552 GTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGGATTCCAACAGCAACCCTCATCAA 424493 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| ||||| || | |||||| || | | ||||||||||| ||| | || || Sbjct 424492 CATGTGCTGTGGCCTTTCTACAACCTTCCCCTGAACCTTCAACAGGTAGGATCTCTCAAG 424433 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||| || || | | || ||||||||| || || || || Sbjct 424432 GGTTTTAAAACCGAAGAAATCATAGTCAAAGTCTCTGTCATATATGAT 424385 >seq27 Length=6178458 Score = 86.0 bits (94), Expect = 9e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 ||||||| ||||| | | ||| || || || |||||| || || |||||| Sbjct 1666023 TCATATTTAGTATACAATCTTTCAAACTCCTCGCCCCAACAGTCTGACAGCCCAGGAGCC 1665964 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 ||||| || || | ||| ||||| ||||| | ||||| || |||||| |||||| Sbjct 1665963 TCATTGGGGCAAAACAAGGACCATTGCCCATCACTTTGAACTCTTTCCATAAAGAGATCG 1665904 Query 69616 GGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTG 69667 |||||||||||||| ||| ||||| || | || || |||||| | || || Sbjct 1665903 GGAATCCAAAGAGCATAAAATAGATCCCTTGCTCGATGTTCTTCCTGTCGTG 1665852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686877863344920