Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 197 1e-45 >seq6 Length=10738081 Score = 197 bits (218), Expect = 1e-45 Identities = 584/877 (67%), Gaps = 25/877 (3%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||| | ||| || ||| |||||||||| || || |||| || || | Sbjct 5633247 TGTTCCCAATTCAATACCCTGAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCTTTCT 5633306 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || ||||||||||| | | |||| || | ||| || || ||| Sbjct 5633307 GGACCGCCGAAGAAGTTGACCTCTCCCAAGATCTACGTGACTGGGAAA-ATCTAACTCAC 5633365 Query 43827 AA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 || ||||| || || || | ||| | || || || ||||| || || || || Sbjct 5633366 GGCGAGAAACACTTCATTACTCTTGTTCTCGCCTTCTTCGCTGCTTCTGATGGTATTGTT 5633425 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 | ||||| ||| ||| || | ||||||||||| | || || || || Sbjct 5633426 ATCGAAAACCTGGCCTCTCGTTTCATGAAAGAAGTTCAAAATTCCGAGGCTCGTGCCTTC 5633485 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || || ||||| || || || || || |||||||| |||||||| || || |||| Sbjct 5633486 TACGGTTTCCAAATAGCAATCGAGAACATCCATTCGGAGATGTACAGCCTCTTGTTAGAA 5633545 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC- 44064 | |||||||| |||| |||||| | || ||||| | || || || || | || Sbjct 5633546 TCCTACATCAAGGATGCAGCCGAGAAAAACCGTCTGTTTCACGCAATTGAGACTATCCCT 5633605 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAAT--GATTCTTTT 44122 |||| | || | ||||| | ||| | ||| ||||| | || | || ||||| Sbjct 5633606 TGCG-TGGAAAAGAAAGCTCAGTGGACACTTCGTTGGATTA--CCAGTTCGGAATCTTTC 5633662 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGC 44181 | ||||| || ||||| || || || || || || ||||| || || | | ||||| Sbjct 5633663 GCCGAACGTCTAGTCGCCTTCGCCTGCGTCGAGGGGATATTCTTCTCTGGCAGCTTTTGC 5633722 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 || ||||| ||||| |||||||| || |||||||| ||||| || |||||||| ||||| Sbjct 5633723 -GCGATATTCTGGTTGAAGAAACGCGGGTTGATGCCGGGGTTAACATTTTCAAACGAGTT 5633781 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGG 44301 ||| | || || || || || |||||||| |||||| || || | || | | | Sbjct 5633782 GATATCAAGAGACGAGGGGTTGCACTGCGATTTCGCTTGCCTGCTA-TACGAGTTTTTGA 5633840 Query 44302 AGACGATAAGCCTTCATGTA-AGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAG 44360 || | ||| || || | || | | | || || |||| || || || | || | Sbjct 5633841 AG--CAGAAG-CTGAGTGAAGAGCGAGTGAAAGGAATCGTTGCGGAAGCGGTGGAAATCG 5633897 Query 44361 AACAAGAATT--TATGACAACAGCATTACC-TGTAAATTTAATAGGAATGAATGAACTTT 44417 | || || |||| | || |||||||| ||| ||| | |||||||| | | Sbjct 5633898 AGAGGGAGTTCGTATG-CGAC-GCATTACCATGT-GCGTTAGTGGGAATGAACGCTGATC 5633954 Query 44418 TGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAAC--TGGGTTGCGA 44475 |||||| || || || || | | | || ||| | || | ||||| | |||| | || Sbjct 5633955 TGATGAGTCAGTACATCGAGTTCGTGGCCGATAGGTTGC--TTGGAGCCTTGGGATACGG 5634012 Query 44476 TAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAA 44535 || || | ||| || ||||| ||||||| ||||| ||||| || |||| || Sbjct 5634013 AAAGATATACAATGTTCAGAACCCTTTTGATTGGATGGAGTTGATTTCTTTACAAGGGAA 5634072 Query 44536 AACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 || || || ||||| ||||| ||||| || |||||| Sbjct 5634073 GACCAATTTCTTTGAGAAACGGGTTGGCGACTATCAG 5634109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397438547086015