Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq66 111 1e-19 seq65 95.1 1e-14 seq22 95.1 1e-14 seq50 89.7 4e-13 seq55 87.8 2e-12 seq97 86.0 5e-12 >seq66 Length=3234583 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||||||| || |||| | | |||||||||||||| || Sbjct 1444523 GTGGACTCCTTTTGGATGTTGTAGTCGGCTAGTGTTCTTC-CATCTTCGAGCTGTTTTCC 1444581 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || |||||||||||||||| || || || | || || || || |||||| || Sbjct 1444582 AGCAAAAATGAGACGCTGTTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTGGCCTT 1444641 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | |||||| | | |||||| ||||| ||||| | || || || || || Sbjct 1444642 CACATTATCGATAGTGTCCGACGATTCAACCTCTAGGGTTATCGTCTTCCCTGTTAGGGT 1444701 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||||||||| Sbjct 1444702 TTTCACGAAGATTTGCAT 1444719 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || ||||||||| || |||| | | |||||||||||||| || Sbjct 1476018 GTGGACTCCTTCTGGATGTTGTAGTCGGCTAGTGTTCTTC-CATCTTCGAGCTGTTTTCC 1476076 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || ||||||| |||||||| || || || | || || || || |||||| || Sbjct 1476077 AGCAAAAATGAGGCGCTGTTGGTCAGGAGGAATCCCTTCCTTGTCCTGAATCTTGGCCTT 1476136 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | |||||| | | |||||| ||||| ||||| | || || || || || Sbjct 1476137 CACATTATCGATAGTGTCCGACGATTCAACCTCTAGGGTTATCGTCTTCCCTGTTAGGGT 1476196 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||||||||| Sbjct 1476197 TTTCACGAAGATTTGCAT 1476214 >seq65 Length=3230173 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || |||||||| || || || | ||| ||| | || || || || || || Sbjct 2675918 GTTGATTCCTTCTGAATATTATAATCCGCCAACGTT-CGCCCATCCTCAAGTTGCTTCCC 2675976 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | ||||| | ||| |||||||| || | |||||||| || ||||||| ||| Sbjct 2675977 AGCAAAGATGAGCCTCTGCTGATCCGGAGGRATGCCCTCTTTGTCCTGGATCTTGGCTTT 2676036 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | |||| ||||| | | || || || || ||||| | ||| || || ||||| Sbjct 2676037 CACATTGTCTATGGTGTCAGAGCTCTCCACCTCCAGTGTTATGGTTTTCCCTGTAAGAGT 2676096 Query 27230 TTTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 2676097 CTTCACAAAGATCTGCATA 2676115 >seq22 Length=7127660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || |||||||| || || || | ||| ||| | || || || || || || Sbjct 3802232 GTTGATTCCTTCTGAATATTATAATCCGCCAACGTT-CGCCCATCCTCAAGTTGCTTCCC 3802174 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | ||||| | ||| |||||||| || | |||||||| || ||||||| ||| Sbjct 3802173 AGCAAAGATGAGCCTCTGCTGATCCGGAGGRATGCCCTCTTTGTCCTGGATCTTGGCTTT 3802114 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | |||| ||||| | | || || || || ||||| | ||| || || ||||| Sbjct 3802113 CACATTGTCTATGGTGTCAGAGCTCTCCACCTCCAGTGTTATGGTTTTCCCTGTAAGAGT 3802054 Query 27230 TTTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 3802053 CTTCACAAAGATCTGCATA 3802035 >seq50 Length=4141196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| ||| | | ||||| | || || ||||| ||||| Sbjct 1513135 GTGGATTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGCCCATCCTCAAGCTGCTTACCA 1513194 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | |||||| || || |||||| ||| Sbjct 1513195 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTC 1513254 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | || || || || || || | || ||||||| || Sbjct 1513255 ACGTTGTCAATCGTATCCGAGCTCTCCACCTCCAGTGTGATGGTCTTCCCCGTCAATGTC 1513314 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 1513315 TTCACGAAGATTTGCAT 1513331 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | | ||||||||||||| || ||| Sbjct 1513591 GTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCTTCGAGCTGCTTTCCG 1513650 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| || || || || | ||| || ||||| |||||| ||| Sbjct 1513651 GCGAATATGAGCCTCTGCTGGTCGGGGGGGATACCTTCCTTATCTTGGATCTTAGCCTTC 1513710 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| |||| || Sbjct 1513711 ACGTTATCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTC 1513770 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 1513771 TTGACAAAGATTTGCAT 1513787 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| || |||| || |||| || ||||| || || Sbjct 1514047 GTCGATTCCTTCTGGATGTTGTAGTCAGCGAGTGTTCGGC-CGTCCTCTAGCTGCTTGCC 1514105 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || |||||||| || || || || | |||||| || || |||||| ||| Sbjct 1514106 GGCAAAGATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTAGCTTT 1514165 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | |||||| | | ||| || || || || || | ||||| || || || Sbjct 1514166 GACGTTGTCGATAGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCAGTAAGGGT 1514225 Query 27230 TTTCACAAAGATTTGCATAGCTGCTAAAAAT-TTATTAAACCTTATTATATT 27280 || || ||||||||||| |||| || | || ||||||||| | ||| Sbjct 1514226 CTTGACGAAGATTTGCAT--CTGCACAACGTAAAATAAAACCTTATGAGATT 1514275 >seq55 Length=3808966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 |||||||||||| || || ||| | || || || || ||||| || || | ||||||||| Sbjct 3139363 GTCTTCGAGCTGCTTTCCTGCGAAGATAAGGCGTTGATGATCAGGAGGTATACCCTCTTT 3139304 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || |||||| |||| | || | |||||| || |||||| ||||| ||||| Sbjct 3139303 GTCTTGGATCTTCACCTTCACATTGTCAATGGTGTCTAAGGATTCAACCTCTAGGGTTAT 3139244 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || |||| ||| ||||| ||||| Sbjct 3139243 GGTCTTCCCGGTTAGGGTTTCCACGAAGATCTGCAT 3139208 >seq97 Length=2389559 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || |||||| | ||||| | ||| || || || || | |||||| || Sbjct 873346 TCCTCAAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGAATACCCTCCTTG 873405 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||| |||| | | || | ||||||| | ||||| |||||||| || Sbjct 873406 TCTAGTATCTTTGCCTTCACGTTGTCAATTGTGTCTGAGCTCTCAACCTCTAGAGTGATT 873465 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 | ||| || || || || ||||||||||| |||||| || || Sbjct 873466 GTTTTCCCAGTGAGGGTCTTCACAAAGATCTGCATACCTCCT 873507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424915740466536