Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 120 4e-22 seq257 102 1e-16 seq44 98.7 1e-15 seq172 93.3 5e-14 seq4 93.3 5e-14 seq8 91.5 2e-13 seq27 87.8 2e-12 seq19 87.8 2e-12 seq2 86.0 8e-12 >seq5 Length=10760127 Score = 120 bits (132), Expect = 4e-22 Identities = 228/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | || || || || ||||| || | || ||||| | ||||| Sbjct 10377439 TCAAGAATGTCTGCACGGTTGGTTGCTGCAATTACAATGATACCAGTGTTTCCCTCAAAA 10377380 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || || | || |||| |||||||| ||||||||||| || | | Sbjct 10377379 CCATCCATTTCAGTCAGAAGCTGGTTAAGGGTTTGTTCCCTCTCATCATTCCCT--CCTC 10377322 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | ||| || || |||||||||||||| | || ||||| || | Sbjct 10377321 CAATTCCAGTTCCTCTTTGTCGTCCAACTGCATCAATCTCATCCACAAATACAATGCAAG 10377262 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || ||| | | |||||||| ||||| | ||||| |||||||||| Sbjct 10377261 GAGCATTCTCCTTGGCCTTCTTGAAGAGATCACGAACTCGAGAAGCACCAACACCAACAA 10377202 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGA 11780 ||||||| ||||| | | ||||| || |||||||||| || ||| || || | Sbjct 10377201 ACATCTCAACAAACTCAGATCCAGAGATGGAGAAGAATGGGACACCTGCTTCTCCAGCAA 10377142 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || ||| || || |||||||| || || || Sbjct 10377141 TTGCCTTGGCAAGAAGAGTCTTTCCGGTTCCAGG 10377108 >seq257 Length=623575 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || || || |||||||||||||| ||||| | || ||| ||||| || || Sbjct 424623 TGAGGCCTCGGAGTCCCAGCATTGAAGAGAGTTGGAGAGGCATGAGTGAACCAACGCTGT 424564 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | |||||| | | ||||||||||||| ||| |||||| || | || Sbjct 424563 GACATCAAATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGGATTCCAACAGCA 424504 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| ||||||| |||||| |||| | | | || | || || | | || || Sbjct 424503 ACCCTCATCAACATGTGCTGTGGCCTTTCTACAACCTTCCCCT-GAACCTTCAACAGGTA 424445 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | ||||||||||||| | ||| ||| || || | ||| |||| Sbjct 424444 GGATCTCTCAAGGGTTTTAAAACCGAAGAAATCATAGTCAAAGTC 424400 >seq44 Length=4426639 Score = 98.7 bits (108), Expect = 1e-15 Identities = 190/276 (69%), Gaps = 16/276 (6%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | | || |||||||| || || ||||| |||||| | Sbjct 1904531 AAACCATCCATCTCCGTCAAGAGCTGGTTAATTGTCTGCTCCCTCTCGTCATTTCC---- 1904476 Query 11600 ATACCACCA-GCACTGC-----GTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||| ||| || |||| | ||| ||||||| ||||||||||||||||| || ||| Sbjct 1904475 --ACCTCCAAGCCCTGCTCCACGCTGCCTGCCCACGGCATCAATCTCATCAATAAACACA 1904418 Query 11654 ATACATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 || || || | |||||| || | ||||| | || ||||||||| || || | Sbjct 1904417 ATGCA-GGGGGCTTTTCGACTTTGCCTTATCAAACAAGTCCCGAACCCTTGACGCTCCAA 1904359 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATT 11771 | || ||||||| || ||||| | || |||| || || || || || | || Sbjct 1904358 CCCCCACAAACAATTCGACAAACTCTGATGCAGCACATGAGAAAAACGGCACCCCAGCTT 1904299 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 | || || | || ||||| || ||||| ||||||| Sbjct 1904298 CTCCGGCAACTGCACGGGCTAGAAGGGT-TTTCCCG 1904264 >seq172 Length=1237761 Score = 93.3 bits (102), Expect = 5e-14 Identities = 191/282 (68%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || || | || || ||||| || || |||||||| ||| | | Sbjct 424953 AACCCATCCATCTCCGTCAGAAGCTGGTTGATTGTCTGCTCCCTCTCATCGTTTCCA--C 424896 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | | ||||| | || ||| | ||||| |||||||| |||||||| || ||||| | Sbjct 424895 CTCCGAGCCCAGCCCCACGCTGCCTACCCACGGCATCAATTTCATCAATAAATACAATGC 424836 Query 11658 ATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 | || | || ||| || |||| || | || |||||||| || || || Sbjct 424835 AGGGGGCCTTGGACTTT-----GCCTTTTCGAACAAGTCCCGAACCCTCGATGCTCCAAC 424781 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 || || |||| ||||||||| | | |||| ||| || || || || | ||| Sbjct 424780 TCCTACGAACAACTCCACAAACTCCGACGCAGCACACGAGAAAAACGGCACTCCAGCTTC 424721 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || | ||| ||||| | ||||||||||| || || || Sbjct 424720 TCCAGCAACGGCACGGGCCAAAAGGGTCTTTCCAGTTCCAGG 424679 >seq4 Length=11052854 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||||||||||||||||| ||||||||| ||||||||||| | ||| Sbjct 7390685 GCAAAGTCGCAGTGGAGACCCTCATCTCTGGAAATAAGCTCATTTGAGAATGTCAATCCT 7390744 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 122759 |||||||| |||| ||| |||| ||| |||| || ||||| Sbjct 7390745 GGCATGAGTCCCCTCTTTTTCAGCCAGAAAATTGCACAGAA 7390785 >seq8 Length=10307871 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| |||| || || | || |||||||| || || ||||| || || Sbjct 4256122 GTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCCGGCATCAGGCC 4256181 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||||||| | || || ||||| ||||||||||| || ||||| || || Sbjct 4256182 GCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAAGAATATCCCCTCGACGCA 4256241 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || || | ||||| || |||||||| Sbjct 4256242 GGCGAATGCGATCAGGCGCTCCGCGAAGGA 4256271 >seq27 Length=6178458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || || ||||||||||| || |||| || || ||||| || ||| Sbjct 1665221 TGGGGCCTTGGAGTCCCTGCATTGAAGAGAGTGGGTGAAGCATGGGTGAACCAACGTTGA 1665162 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | |||||| | | | |||| ||||| || || |||||| || | | Sbjct 1665161 GACATCAAATGGTATGTTTTAATGGCAGATTCAATATCATCTTTGTGGATCCCAACAGTA 1665102 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| ||||||| ||||| | || | | | || | || || | | ||||| Sbjct 1665101 ACCCTCATCAACATGTGTTGTGGCCTCTCTACAACCTTTCCCT-GAACCTTCAATAGATA 1665043 Query 112120 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | |||| || |||||||||| |||||||||| || | || |||| Sbjct 1665042 CGATCTT-TCGAGGGTTTTGAAACCAAAGTAATCATAGTCGAAGTC 1664998 >seq19 Length=7695933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 8/112 (7%) Strand=Plus/Minus Query 183596 AAACTCCGATGAGTAGATGTTGGTCAACTTGGCACCATAGCCGTTGCGACCTCCCACAAT 183655 |||||| | |||| |||||||||||| ||| |||||||| || || |||||||| | Sbjct 557428 AAACTCGGTTGAGAAGATGTTGGTCAGCTTCGCACCATATCCATT----CCTCCCACCAG 557373 Query 183656 TC-TCTTCTT---TGTGTCATCATAATTTGTACTCGTAAGAAGATGCCCAAA 183703 || ||||||| ||| ||||| ||||| | ||||| | |||||||||||| Sbjct 557372 TCGTCTTCTTCACTGTATCATCGTAATTACTGCTCGTCAAAAGATGCCCAAA 557321 >seq2 Length=14146038 Score = 86.0 bits (94), Expect = 8e-12 Identities = 266/405 (66%), Gaps = 10/405 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || ||||| ||||| || | |||||| ||||| ||||||||| || Sbjct 4728505 AAAACCATCCATTTCTGTGAGCAATTGGTTCAGTGTTTGCTCTCTTTCATCATTTCCT-- 4728562 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || | | | | | | || || ||||| ||||||||||| || || | Sbjct 4728563 CCTCCAATGCCTGTTCCTCTCTTCCTTCCAACGGCATCTATCTCATCAATAAAAACCAGG 4728622 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 |||||| ||| || | | || | ||| | || ||| || ||||| ||| Sbjct 4728623 CATGGTGAATTCATCTTTGCCTTGTTGAATAAATCTCTTACTCTTGAAGCCCCCACCCCA 4728682 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACC 11775 ||||||||||| | || | || | |||| || | | ||| ||||| || ||| || Sbjct 4728683 ACAAACATCTCAATGAACTCTGAGCCAGA-CAGAGAAAAGAAAGGGACCCCTGCTTCTCC 4728741 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 || ||||| || || | |||||||| || ||||| |||| | || || | || Sbjct 4728742 AGCAATGGCCTTAGCCAGCAATGTCTTTCCAGTCCCTGGTGGACCCACTAGCAGAACACC 4728801 Query 11836 TCGGGGGATCTTGGCACCACT--TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACA 11893 | || || | || ||| | | ||| | ||| |||| ||| | || |||||| Sbjct 4728802 TTTAGGAATTCTTGCTCCAATAGTAGCAAACTTTTCTGGGGT--CTTTAAGAATTCCACA 4728859 Query 11894 ATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 | ||||| | || | || ||| |||||| || | |||||| Sbjct 4728860 ACCTCTTGGAAGTCTTGCTTTGCCTCGTCAACTCCAGCTACATCA 4728904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628003715008800