Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq8 114 2e-20 seq6 87.8 2e-12 seq257 86.0 8e-12 seq4 84.2 3e-11 >seq8 Length=10307871 Score = 114 bits (126), Expect = 2e-20 Identities = 160/223 (72%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || |||||||| | ||||| | || || ||||| | || ||||| || || Sbjct 4256122 GTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCCGGCATCAGGCC 4256181 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||||||||||||||| |||||||| || ||| |||||||| |||||||| || || Sbjct 4256182 GCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAAGAATATCCCCTCGACGCA 4256241 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCG 130205 ||||| || | || ||||| || ||||| ||| || || | ||| | | | Sbjct 4256242 GGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAAC----CGTCGATCCATTGGAGGG 4256297 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||||| || |||||| | | || |||||||||| ||| || Sbjct 4256298 CCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGC 4256340 >seq6 Length=10738081 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| | || || |||||||||||||| ||||| ||||| |||||||||||| Sbjct 5633760 CCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGCGCAAAAGCTGCCAGAGAAGAAT 5633701 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATC 130191 |||||||| || || ||||| || | ||||| || || |||| | | ||| ||| Sbjct 5633700 ATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAACTGGTAATC 5633641 Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 ||| | | | |||||| || || || || | || |||| |||| || || | Sbjct 5633640 CAACGA----AGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGTG 5633585 Query 130252 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 ||| || || || || | || ||| |||||||| Sbjct 5633584 AAACAGACGGTTTTTCTCGGCTGCATCCTTGATGTA 5633549 >seq257 Length=623575 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGG 118239 ||||||||| | |||||||||||||||||||||||||| || |||| | | || || | Sbjct 427346 ATAGATATTAGAGGTGTATGGCTCAAAGCACTCATTGTTGCC-AAGAATCTGACTAGTTG 427288 Query 118240 AGGCTGTGGGCATGGGTGCCATGAGAAGG 118268 | ||||||||||||||||| | |||||| Sbjct 427287 AAGCTGTGGGCATGGGTGCTACAAGAAGG 427259 >seq4 Length=11052854 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || |||||||||||| || | ||| || || ||||| ||||| || ||| Sbjct 7390685 GCAAAGTCGCAGTGGAGACCCTCATCTCTGGAAATAAGCTCATTTGAGAATGTCAATCCT 7390744 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA 130116 |||||||| |||| ||| |||| ||||||||| ||||| || Sbjct 7390745 GGCATGAGTCCCCTCTTTTTCAGCCAGAAAATTGCACAGAA 7390785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618407347224680