Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 129 7e-25 seq44 107 2e-18 seq257 91.5 2e-13 seq172 89.7 6e-13 seq27 86.0 7e-12 >seq5 Length=10760127 Score = 129 bits (142), Expect = 7e-25 Identities = 238/339 (70%), Gaps = 14/339 (4%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| || || | || || || || || || |||| ||||| |||||| | ||| Sbjct 10377439 TCAAGAATGTCTGCACGGTTGGTTGCTGCAATTACAATGATACCAGTGTTTCCCT--CAA 10377382 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 |||||||||| || |||| ||| ||||||| |||||||||| ||||||||| || | Sbjct 10377381 AACCATCCATTTCAGTCAGAAGCTGGTTAAGGGTTTGTTCCCTCTCATCATTCCCT--CC 10377324 Query 9675 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | |||| | | ||| ||| || |||||||||||||| | || || ||||| Sbjct 10377323 TCCAATTCCAGTTCCTCTTTGTCGTCCAACTGCATCAATCTCATCCACAAATACAATGCA 10377264 Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || ||| || | | | |||| |||||||| || || || || || |||||| Sbjct 10377263 AGGAGCATTCTC-CTTG-GCCTTCTTGAAGAGATCACGAACTCGAGAAGCACCAACACCA 10377206 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 ||||||||||| ||||| | | | | | || | || ||| |||||| | ||| || Sbjct 10377205 ACAAACATCTCAACAAACTCAGATCCAG-AGATGGAGAAGAATGGGACACCTGCTTCTCC 10377147 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| || ||| ||||||||||| || || || || Sbjct 10377146 AGCAATTGCCTTGGCAAGAAGAGTCTTTCCGGTTCCAGG 10377108 >seq44 Length=4426639 Score = 107 bits (118), Expect = 2e-18 Identities = 198/285 (69%), Gaps = 19/285 (7%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 |||||||||||||| ||||| || |||||||| || || |||| || ||||| | Sbjct 1904531 AAACCATCCATCTCCGTCAAGAGCTGGTTAATTGTCTGCTCCCTCTCGTCATTTCC---- 1904476 Query 9674 ATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 ||| || ||| ||| || ||| | ||||||||||||||||||||||| || || Sbjct 1904475 --ACCTCCAAGCCCTGCTCCACGCTGCCTGCCCACGGCATCAATCTCATCAATAAACACA 1904418 Query 9728 ATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCC 9783 ||||| || | |||||| | || ||||| | ||||| || |||| || || Sbjct 1904417 ATGCA-GGGGGCTTTTCGACTTTGCCTTATCAAACAAGTCCCG--AACCCTTGACGCTCC 1904361 Query 9784 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 9843 || || ||||||| || ||||| | || || | |||| || || || || || Sbjct 1904360 AACCCCCACAAACAATTCGACAAACTCTGATGCAGCACATGAGAAAAACGGCACCCCAGC 1904301 Query 9844 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| || |||| || ||||| ||||| || || || || || || Sbjct 1904300 TTCTCCGGCAACTGCACGGGCTAGAAGGGTTTTCCCGGTTCCAGG 1904256 >seq257 Length=623575 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 ||||||| |||| || || || ||| | ||||||||||||| ||| || | | | Sbjct 424397 AGAGACTTTGACTATGATTTCTTCGGTTTTAAAACCCTTGAGAGATCCTACCTGTTGAAG 424456 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || || ||| | |||| |||||| ||||||| ||| | || || | || || Sbjct 424457 GTTCAGGGGAAGGTTG-TAGAAAGGCCACAGCACATGTTGATGAGGGTTGCTGTTGGAAT 424515 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 || ||| ||||||||||||| | | |||||| | |||||| || || ||| Sbjct 424516 CCACAAGGATGACATTGATTCTGCTATCAAAACATACCATTTGATGTCACAGCGTTGGTT 424575 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 || ||| || | ||||| |||||||||||||| || || || || ||| Sbjct 424576 CACTCATGCCTCTCCAACTCTCTTCAATGCTGGGACTCCGAGGCCTCAA 424624 >seq172 Length=1237761 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/282 (67%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||| |||| ||| ||||| || || || |||| ||||| || | | Sbjct 424953 AACCCATCCATCTCCGTCAGAAGCTGGTTGATTGTCTGCTCCCTCTCATCGTTTCCA--C 424896 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | ||||| | || ||| | |||||||||||||| |||||||| || || |||| Sbjct 424895 CTCCGAGCCCAGCCCCACGCTGCCTACCCACGGCATCAATTTCATCAATAAATACAATGC 424836 Query 9732 ATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786 | || | || ||| || ||| || | ||||| || | | || || || Sbjct 424835 AGGGGGCCTTGGACTTT-----GCCTTTTCGAACAAGTCCCGAACCCTCGATGCTCCAAC 424781 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 || || |||| ||||||||| | | || | ||| || || || || || ||| Sbjct 424780 TCCTACGAACAACTCCACAAACTCCGACGCAGCACACGAGAAAAACGGCACTCCAGCTTC 424721 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || |||| ||| ||||| | ||| ||||| || || || || Sbjct 424720 TCCAGCAACGGCACGGGCCAAAAGGGTCTTTCCAGTTCCAGG 424679 >seq27 Length=6178458 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAAC 104195 ||||||| ||||| || ||| |||||| |||||||||| || |||| | ||||| | | Sbjct 1664995 AGAGACTTCGACTATGATTACTTTGGTTTCAAAACCCTCGA-AAGATCGTATCTATTGAA 1665053 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 || || | ||| | || | ||||| ||||||| ||| | || | | || | Sbjct 1665054 GGTTCAGGGAAAGGTTG-TAGAGAGGCCACAACACATGTTGATGAGGGTTACTGTTGGGA 1665112 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 104315 | || || || ||||| |||| | | | |||||| | |||||| ||| || || Sbjct 1665113 TCCACAAAGATGATATTGAATCTGCCATTAAAACATACCATTTGATGTCTCAACGTTGGT 1665172 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || || |||| || ||||||||||| || || ||||| |||||| Sbjct 1665173 TCACCCATGCTTCACCCACTCTCTTCAATGCAGGGACTCCAAGGCCCCAA 1665222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583234531391720