Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq8 179 4e-40 seq6 122 1e-22 seq4 84.2 2e-11 >seq8 Length=10307871 Score = 179 bits (198), Expect = 4e-40 Identities = 409/604 (68%), Gaps = 16/604 (3%) Strand=Plus/Minus Query 59523 GACCCTATTCTCGCGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGAT 59582 || ||||||||||| |||||| | | || ||| | || || || | || || | Sbjct 4256718 GAGCCTATTCTCGCTCCGAGCCCAGATCGGTTCTGTATGTTCCCAATTCAATATCCCCAA 4256659 Query 59583 CTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTC 59642 | |||| |||| |||||||| | || |||||| | | ||| || |||| ||| Sbjct 4256658 ATATGGGAAATGTACAAGAAAGCCGAAGCCTCCTTCTGGACTGCCGAAGAAGTTGATCTC 4256599 Query 59643 GCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATG 59702 || ||| || | ||||| | || | | |||||| | || ||||| | Sbjct 4256598 TCCCAAGATCTCCGTCACTGGGAAATCCTAACCCATGACGAGAAACACTTCATTACTCAT 4256539 Query 59703 GTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT 59762 || |||||||||||||| || ||| || ||||| | ||||| | | || | | Sbjct 4256538 GTACTGGCCTTCTTCGCTGCTTCTGACGGTATTGTTCTCGAAAACCTCG--CTGCTCGGT 4256481 Query 59763 TC--CAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC--AGTCGTTCAA 59818 || ||||| ||||| || |||||||||| | || |||| || || | ||| | | Sbjct 4256480 TCATGAAGGAAGTCCAAATCTCCGAGGCCCGTGCATTTTACG-GTTTCCAAATCGCT-AT 4256423 Query 59819 CGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGA 59878 ||| ||||||||||||| |||| ||| || | || | |||||||| ||| Sbjct 4256422 TGAGAACATCCACTCCGAGATGTACAGCCTCTTGTTGGAATCATACATCAAGGATTCGGC 4256363 Query 59879 AGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA-CGTCCCCCGCAGTTAAACAAAAAGCAG 59937 |||||| | |||||||| || || |||| ||||||| || || ||||||| | Sbjct 4256362 CGAGAAGAGCCGCCTGTTCCGCGCAATCGAGACCGTCCCCTGC-GTGGCGAAAAAAGCCG 4256304 Query 59938 AATGGGCCATGCAGTGGAT-GA--GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTT 59994 | |||||| | || ||||| || || | | ||| || || | || || || || | Sbjct 4256303 AGTGGGCCCTCCAATGGATCGACGGTTC---CGAATCCTTCGCGGAGCGCCTGATCGCAT 4256247 Query 59995 TTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAA 60054 | || ||||| || || || |||||||| ||| |||||||| || |||||| | || | Sbjct 4256246 TCGCCTGCGTCGAGGGGATATTCTTCTCCGGCAGCTTCTGTGCGATATTCTGGTTGAAGA 4256187 Query 60055 AGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCC 60114 |||| ||||| ||||||||| | | |||||| |||||| |||| || | |||||||| | Sbjct 4256186 AGCGCGGCCTGATGCCGGGCTTAACTTTCTCAAACGAGTTGATCTCGAGAGACGAGGGGC 4256127 Query 60115 TCCA 60118 | || Sbjct 4256126 TACA 4256123 >seq6 Length=10738081 Score = 122 bits (134), Expect = 1e-22 Identities = 363/548 (66%), Gaps = 18/548 (3%) Strand=Plus/Plus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 ||||| || | |||| |||| ||||| || | || |||||| ||| ||| || Sbjct 5633261 TACCCTGAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAA 5633320 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 |||||||| || ||| || || ||||| || || | | ||| |||| | || ||| Sbjct 5633321 GTTGACCTCTCCCAAGATCTACGTGACTGGGAAAATCTAACTCACGGCGAGAAACACTTC 5633380 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 || | | || || ||||||||||| || |||||| ||||| || ||||| | | | Sbjct 5633381 ATTACTCTTGTTCTCGCCTTCTTCGCTGCTTCTGATGGTATTGTTATCGAAAACCTGGCC 5633440 Query 59754 ATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC--A 59809 | |||| || || || || | | ||||||| || | ||||||| || || | Sbjct 5633441 TCT--CGTTTCATGAAAGAAGTTCAAAATTCCGAGGCTCGTGCCTTCTACG-GTTTCCAA 5633497 Query 59810 GTCGTTCAA-CGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCA 59868 | | ||| |||| ||||| || |||| |||| ||| || | || | ||| Sbjct 5633498 ATAG--CAATCGAGAACATCCATTCGGAGATGTACAGCCTCTTGTTAGAATCCTACATCA 5633555 Query 59869 AGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAA 59927 ||||| | | ||||| ||||||| | || || ||||| |||| || || || Sbjct 5633556 AGGATGCAGCCGAGAAAAACCGTCTGTTTCACGCAATTGAGACTATCCCTTGC-GTGGAA 5633614 Query 59928 CAAAAAGCAGAATGGGCCATGCAGTGGATGA---GTCCTGGAGCATCATTTGCACAACGT 59984 | ||||| | ||| | | | ||||| | || | ||| ||| || || ||||| Sbjct 5633615 AAGAAAGCTCAGTGGACACTTCGTTGGATTACCAGTTC-GGA--ATCTTTCGCCGAACGT 5633671 Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 || | || || || ||||| || || || |||||||||||| || || || || ||| Sbjct 5633672 CTAGTCGCCTTCGCCTGCGTCGAGGGGATATTCTTCTCTGGCAGCTTTTGCGCGATATTC 5633731 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 ||| | || || || || | |||||||| | | || || |||||| |||| || | Sbjct 5633732 TGGTTGAAGAAACGCGGGTTGATGCCGGGGTTAACATTTTCAAACGAGTTGATATCAAGA 5633791 Query 60105 GACGAGGG 60112 |||||||| Sbjct 5633792 GACGAGGG 5633799 >seq4 Length=11052854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 |||||||| ||||||||||| |||||| | || |||||||| || ||| ||||| || Sbjct 7390785 TTCTGTGCAATTTTCTGGCTGAAAAAGAGGGGACTCATGCCAGGATTGACATTCTCAAAT 7390726 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| |||||| | || ||||| ||||| Sbjct 7390725 GAGCTTATTTCCAGAGATGAGGGTCTCCA 7390697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548500095814320