Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq3603 580 1e-160 seq199 158 1e-33 seq74 145 9e-30 seq40 122 1e-22 seq182 82.4 9e-11 >seq3603 Length=163330 Score = 580 bits (642), Expect = 1e-160 Identities = 703/955 (74%), Gaps = 2/955 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||| ||||| | ||||| || | | || || | | ||| Sbjct 1412 TTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 1354 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 1353 TTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 1294 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || |||||||| ||||||||||| || ||||| || || | | || | || Sbjct 1293 TCTGGGTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCA 1234 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || ||||| | ||||| || || ||||||||||| ||| | ||||| |||||| | ||| Sbjct 1233 GCTATCGGTTTGCACTTTTATCCGATCTGGGAAGCGGCATCCGTTGATGAATGGTTATAC 1174 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || |||| |||| | |||||| | | ||| | | ||||||| Sbjct 1173 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 1114 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || ||||||||||||||| | | || || |||||||||||||| ||||||||| Sbjct 1113 GGTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 1054 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | |||| ||| | ||||||||| Sbjct 1053 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 994 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||||| || || || ||||| |||||||| ||| |||||||||| Sbjct 993 TTCTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 934 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || || Sbjct 933 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 874 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || |||||| | | || || || Sbjct 873 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTAATCAGGGAAACC 814 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| |||||| ||||| ||||| || || || Sbjct 813 ACTGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 754 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || |||||||| || ||||| ||||| || | |||||||| |||||| |||||| || Sbjct 753 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAT 694 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | || |||||||| || || | || || || | |||||||||||||| Sbjct 693 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCT 634 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| | |||| ||||| |||||||| || |||||||| |||||||| ||||| | Sbjct 633 TTAGGTATCAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTT 574 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 |||| ||| || ||| || |||| ||||| | |||||||| ||||||||| Sbjct 573 GACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGT 514 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 |||||||||||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 513 ATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 459 Score = 147 bits (162), Expect = 3e-30 Identities = 206/287 (72%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || ||||| || || ||| | || | |||||| | | ||| ||||| Sbjct 128558 ACCTGTAACTATTCAATATCCCTATGAAAAATTGATCACATCAGAGCGTTTCCGCGGTCG 128499 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || || || || ||||| || ||||| | ||||| ||||| Sbjct 128498 AATCCACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTAT 128439 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAG--AAGAAAGAACTTAGA 19472 ||||||| || || |||||| || | ||| || | |||||| | | Sbjct 128438 AGATCTACCCGTTGTTGATTGGAGATTGGA--AACTGATATTCGAAAGAAACGATTGCTT 128381 Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 ||||| || || |||||| ||||| || || |||||||| || |||||||| ||| Sbjct 128380 AATTACAGTATTGATTTTGGAATCTGTATATTTTGTGGTAACTGTGTCGAGTATTGTCCA 128321 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 128320 ACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 128274 >seq199 Length=1013994 Score = 158 bits (174), Expect = 1e-33 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 176881 TTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACA 176940 |||||||| || || | || || || | |||||||||||||| | ||| | |||| Sbjct 992602 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACC 992543 Query 176941 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAA 177000 ||||| |||||||| || |||||| | |||||||| ||||| | |||| ||| Sbjct 992542 ATGGCTTTCAACCTAAATGGTTTCRATTTCAACCAATCTGTAGTTGACAGTCAAGGTCGT 992483 Query 177001 GTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCAC 177060 || ||| | |||| ||||| | ||||| || ||||||||||||||||||||||| Sbjct 992482 GTAATTAACTCTTGGGCTGATATTATCAACCGYGCTAACCTTGGTATGGAAGTTATGCAT 992423 Query 177061 GAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 || |||||||||||||||||||| | ||||| ||| ||| Sbjct 992422 GAACGTAATGCTCACAACTTCCCTTTAGACCTAGCTACTG 992383 >seq74 Length=3028681 Score = 145 bits (160), Expect = 9e-30 Identities = 280/410 (68%), Gaps = 5/410 (1%) Strand=Plus/Plus Query 176460 ACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATC 176519 |||||||| | || || |||| ||||||||| | ||||||||| | | | || Sbjct 694346 ACTTAGTTTTCGTCTGGGTATGCATCCTTGGATTTCTGTTGCATATTAAGGTCTTGTGGT 694405 Query 176520 TGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTAT 176579 | || | | || ||| | |||||||| | ||||||||| |||||||||||||| Sbjct 694406 AGATGCTACTACTGTCTTCTTGATCTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTAT 694465 Query 176580 GCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACAT 176639 |||| | || || | || ||| |||||||| ||| |||||||| | || || ||||||| Sbjct 694466 GCCTTTAGGGATCTTAG-TACTTTCAACTTCATGATTGTATTCTAGGCTTAGGACAACAT 694524 Query 176640 TCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTC 176699 || ||||||||||| || ||| | || ||||| ||| | || ||| ||||| || Sbjct 694525 CCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTATATTCTATGGTTCTCTGTTTGG 694584 Query 176700 AGCAATGCACGGAAGTCTT--GTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAA 176757 || ||||| | || | || |||||| | | || || || |||||||| | Sbjct 694585 TGCTATGCATTG--TTCCTCGGTAACTTCTATTTTAATCAGGGAAACCACCGAAAATTAT 694642 Query 176758 TCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCA 176817 | || | ||||| |||| | || |||| || || || |||||| | | Sbjct 694643 TTTGTTAATGAAGGTTATGGATTCAGTTTAGGGAAAGAAACTTATAATATTGTAACCACC 694702 Query 176818 CACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867 || ||||| ||||| || |||||||| |||||| |||||| || || Sbjct 694703 CATGGTTATTTTGGCGAACTGATCTTCCAATATGCTAGTTTCAACAATTC 694752 >seq40 Length=4681830 Score = 122 bits (134), Expect = 1e-22 Identities = 205/292 (70%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 19291 GAAGACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTG 19350 ||| |||||||| | | || ||||| || || ||| | || | |||||| | | ||||| Sbjct 4393080 GAACACCTGTAATATT-CAATATCCCTATGAAAAATTGATCACATCAGAGTGTTTCCGTG 4393022 Query 19351 GTCGTATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCC 19410 || | || |||| ||| ||||| || || || || ||||| | ||||| | | ||| | Sbjct 4393021 GTTGAATCCACTTTGAATTTGATAAATGCATTGCTTGTGAAATATGTGTTCGTGCATGTC 4392962 Query 19411 CTATCAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAG--AAGAAAGAACT 19468 |||| ||||||| || || |||||| || | ||| || | |||||| | | Sbjct 4392961 CTATAGATCTACCCGTTGTTGATTGGAGATTGTA--AACTGATATTTGAAAGAAATGATT 4392904 Query 19469 TAGAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTG 19528 ||||| || || |||||| ||||| || || ||||| | || |||||||| Sbjct 4392903 GCTTAATTACAGTATTGATTTTGGAATCTGTATATTTTGTAGTAACCGTGTCGAGTATTG 4392844 Query 19529 CCCAACAAACTGTCTATCCA-TGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||||||| | | |||| | |||| |||||||||||| | |||| ||||| Sbjct 4392843 TCCAACAAATTATTTATCAAATGACTGAAGAATATGAACTTTCTACTTTTGA 4392792 >seq182 Length=1158164 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 19482 ATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGT 19541 || || |||||| ||||| || || |||||||| || |||||||| ||||||| ||| Sbjct 1078775 ATTGATTTTGGAATCTGTATATTTTGTGGTAACTGTGTCGAGTATTGTMCAACAAATTGT 1078716 Query 19542 CTATCCATGACAGAAGAATATGAA 19565 |||| ||||| |||||||||||| Sbjct 1078715 TTATCAATGACTGAAGAATATGAA 1078692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603467220120960