Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq65 96.9 2e-15 seq22 96.9 2e-15 seq17 95.1 9e-15 seq30 89.7 4e-13 seq97 86.0 4e-12 >seq65 Length=3230173 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||||||||| || || || |||| || |||||| || Sbjct 2677026 ATGCAGATCTTTGTTAAGACTCTTACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCC 2676967 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| ||||| ||||| ||||| ||||| | || || | Sbjct 2676966 GACACTATTGACAAT--GTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCACCTGACC 2676909 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||| | || ||||| || || ||| |||| || | || | |||| | ||||||| Sbjct 2676908 AGCAGCGGCTTATCTTTGCTGGTAAGCAACTGGAGGATGGCCGAACCTTGGCAGATTACA 2676849 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | ||| ||||| | || ||| | || || Sbjct 2676848 ACATCCAGAAGGAGTCCACCCTCCATCTGGTTCTTCGATTGAGGGGTGG 2676800 >seq22 Length=7127660 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || |||||||| || || || || |||| || |||||| || Sbjct 3801178 ATGCAGATTTTTGTTAAGACTCTTACAGGCAAGACCATCACCCTTGAGGTTGAAAGCTCC 3801237 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| ||||| ||||| ||||| ||||| | || || | Sbjct 3801238 GACACTATTGACAAT--GTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCTGACC 3801295 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||| | || ||||| || |||||| | || || | || | |||| | ||||||| Sbjct 3801296 AGCAGCGGCTTATCTTTGCTGGTAAACAACTAGAGGATGGCCGAACCTTGGCAGATTACA 3801355 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | ||| ||||| | || ||| | || || Sbjct 3801356 ACATCCAGAAGGAGTCCACCCTCCATCTGGTTCTTCGATTGAGGGGTGG 3801404 >seq17 Length=7869039 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || ||||| || || ||| || || |||| || || ||| | Sbjct 3558080 AATGCAAATCTTTGTCAAGACTCTAACCGGAAAAACAATCACTCTTGAAGTTGAGAGCTC 3558021 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || |||| | || ||||| |||||| || || || || |||| || Sbjct 3558020 TGATACGATTGATAAC--GTCAAGGCAAAAATTCAGGATAAGGAGGGCATTCCCCCAGAC 3557963 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| || |||||||||||||||| || | || || | || | ||| | |||||| Sbjct 3557962 CAGCAAAGGCTAATTTTTGCCGGAAAGCAGCTCGAGGATGGTCGTACTTTGGCTGATTAC 3557903 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| || |||||| |||| | ||| | ||||| || Sbjct 3557902 AACATCCAGAAGGAGTCTACCTTGCATCTGGTCCTCCGTCTTCGTGGGGG 3557853 >seq30 Length=5940761 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || ||||| || || || || || |||| || || ||| | Sbjct 3346613 AATGCAAATTTTTGTCAAGACTCTCACCGGAAAGACAATCACTCTTGAAGTTGAGAGCTC 3346554 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| ||| ||||| ||||| ||| || ||||| || || |||| || Sbjct 3346553 CGACACGATTGACAAT--GTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCCCCAGAC 3346496 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| |||| |||||||| || || || | || || | | | | | || | |||||| Sbjct 3346495 CAACAAAGGTTGATTTTTGCTGGGAAGCAGCTTGAGGATGGAAGGACCCTGGCAGATTAC 3346436 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| || ||||| |||| | ||| | ||||| || Sbjct 3346435 AACATCCAGAAGGAGTCTACCTTGCACCTGGTCCTCCGTCTCCGTGGGGG 3346386 >seq97 Length=2389559 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || |||||||| || || || |||| || || ||| | Sbjct 873729 AATGCAAATTTTTGTAAAGACGCTTACTGGAAAGACCATAACCCTTGAGGTTGAGAGCTC 873670 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| |||||| ||| || ||||| || ||| |||| || Sbjct 873669 AGATACGATTGATAAT--GTCAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGAC 873612 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | |||||||| ||||| || | || || | | | |||| | || || Sbjct 873611 CAGCAGAGGCTGATTTTTGCTGGAAAGCAGCTAGAGGATGGCAGGACCTTGGCTGACTAT 873552 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||| || || ||| ||||||||| ||||| Sbjct 873551 AACATTCAGAAGGAGTCTACTTTGCATCTGGTT 873519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || | || ||||| ||||| | || || || ||| | Sbjct 873272 ATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACAATTACTCTGGAGGTAGAGAGCTCA 873213 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || ||| || ||||| || ||| |||| || | Sbjct 873212 GATACCATTGATAAT--GTGAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTGATC 873155 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | |||||||| || || || ||||| || | ||||| ||| ||||||||| Sbjct 873154 AGCAGAGGCTCATTTTTGCTGGGAAGCAGTTGGAAGATGGACGCACTTTGGCCGATTACA 873095 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || || || ||||||||||| | ||| | ||||| || Sbjct 873094 ACATACAGAAGGAATCTACATTGCATTTGGTGCTTCGTCTACGTGGTGG 873046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355846773525981