Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq143 96.9 3e-15 seq50 89.7 4e-13 >seq143 Length=1536321 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || ||||| |||||||| || || || | || |||||||| || || || || Sbjct 384170 TCCTTCTGGATATTGTAATCGGCCAGAGTACGCCCATCCTCAAGCTGCTTTCCAGCGAAG 384229 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | || ||| |||||| ||||||| |||| | Sbjct 384230 ATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATTTTCGCCTTGACATTA 384289 Query 39214 GCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | ||| || ||| |||||| |||| ||||| | || || ||||| || || Sbjct 384290 TCAATCGTGTCCGAGCT---CTCCACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTC 384346 Query 39271 ACAAAGATTTGCATC 39285 || || ||||||||| Sbjct 384347 ACGAAAATTTGCATC 384361 >seq50 Length=4141196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || |||||||| || || || | || |||||||| || || || || Sbjct 1513141 TCCTTCTGGATGTTGTAATCGGCGAGGGTGCGCCCATCCTCAAGCTGCTTACCAGCGAAG 1513200 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | | ||| |||||| ||| ||| || | ||| Sbjct 1513201 ATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTT 1513259 Query 39214 G-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTT 39269 | | | |||||| ||| |||||| |||| ||||| | || ||||||| || || Sbjct 1513260 GTCAATCGTATCCGAGCT---CTCCACCTCCAGTGTGATGGTCTTCCCCGTCAATGTCTT 1513316 Query 39270 AACAAAGATTTGCAT 39284 || ||||||||||| Sbjct 1513317 CACGAAGATTTGCAT 1513331 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || || || || |||||||| |||| || ||||| ||||| ||||| Sbjct 1514053 TCCTTCTGGATGTTGTAGTCAGCGAGTGTTCGGCCGTCCTCTAGCTGCTTGCCGGCAAAG 1514112 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | ||| | | ||| |||||| ||| || ||||| ||| Sbjct 1514113 ATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTAGCTTTGA-CGTT 1514171 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| || || || | ||||| | || || || || || || || Sbjct 1514172 GTCGATAGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGAC 1514231 Query 39273 AAAGATTTGCATCT 39286 ||||||||||||| Sbjct 1514232 GAAGATTTGCATCT 1514245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429526737981539