Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq6 134 1e-26 seq8 131 1e-25 >seq6 Length=10738081 Score = 134 bits (148), Expect = 1e-26 Identities = 402/617 (65%), Gaps = 5/617 (1%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || || ||||| || ||||| || |||||||| |||| ||||| ||||| ||||| Sbjct 5633820 CAAGCGAAATCGCAGTGCAACCCCTCGTCTCTTGATATCAACTCGTTTGAAAATGTTAAC 5633761 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| || || | || || | ||| ||||| ||| ||| ||||| |||||| Sbjct 5633760 CCCGGCATCAACCCGCGTTTCTTCAACCAGAATATCGCGCAAAAGCTGCCAGAGAAGAAT 5633701 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 || || || ||| ||| || || |||| || |||| || | || || Sbjct 5633700 ATCCCCTCGACGCAGGCGAAGGCGACTAGACGTTCGGCGAAAGATTCCGAACTGG---TA 5633644 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| | || ||| | |||||| || | ||||| || || || | || |||| | Sbjct 5633643 ATCCAACGAAGTGTCCACTGAGCTTTCTTTTCCACGCAAGGGATAGTCTCAATTGCGTGA 5633584 Query 4788 AATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 || | |||| || || || | || || | |||| | ||||| ||||| Sbjct 5633583 AACAGACGGTTTTTCTCGGCTGCATCCTTGATGTAGGATTCTAACAAGAGGCTGTACATC 5633524 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 || ||||| || || || || || || || || ||||| ||| | ||| || | | Sbjct 5633523 TCCGAATGGATGTTCTCGATTGCTATTTGGAAACCGTAGAAGGCACGAGCCTCGGAATTT 5633464 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 |||||||| || || | | | ||||||| | || ||||| ||| || || Sbjct 5633463 TGAACTTCTTTCATGAAACGAGAGGCCAGGTTTTCGATAACAATACCATCAGAAGCAGCG 5633404 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGG 5027 || || || | |||| ||| || |||| | ||| | | | || |||| ||||| Sbjct 5633403 AAGAAGGCGAGAACAAGAGTAATGAAGTGTTTCTCGCCGTGAGTTAGATTTTCCCAGTCA 5633344 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTG 5087 | | ||||| | | ||||||||||| | ||||| || || || || || || ||| Sbjct 5633343 CGTAGATCTTGGGAGAGGTCAACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTG 5633284 Query 5088 TACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTTGTCGTTAGG 5146 ||||| ||| || ||||| || ||||| || | || ||| ||||| | || || Sbjct 5633283 TACATTTCCCAGATTTCAGGGTATTGAATTGGGAACAT-ACAGAATCTATCTGGATTTGG 5633225 Query 5147 TGTAAGAAGCGGTTCTT 5163 | ||||| ||||||| Sbjct 5633224 GGCGAGAAGAGGTTCTT 5633208 >seq8 Length=10307871 Score = 131 bits (144), Expect = 1e-25 Identities = 552/866 (64%), Gaps = 7/866 (1%) Strand=Plus/Plus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||| |||||||| || | || ||||||||||| ||||| || | ||||| || Sbjct 4255816 TTTCTGGTATTCTCCAACCCTTTTCTCGAAGAAATTGGTTTTCCCCTGCAACGAGATCAG 4255875 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 ||||| ||||||||||||| ||||||| ||| || | | || | || Sbjct 4255876 CTCCATCCAATCAAACGGATTCTGAACGTTGTAGATCTTTCCATATCCCAAGGCACCGAG 4255935 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 ||| || || || || || || |||||||||||||| || || ||||| || || | || Sbjct 4255936 CAAACGATCGGCCACGAACTCGATATACTGGCTCATCAGATCACAGTTCATCCCCACCAA 4255995 Query 4436 TCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 | |||| || | |||| || ||||| || || || || || | | | Sbjct 4255996 -CGCACACGGCAATGCGTCGCACACGAACTCCCTCTCGATGTCCACTGCGTCGGCAACAA 4256054 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAA 4554 | | || | | || | | |||| | || | | | | | |||||| | Sbjct 4256055 TTCCCTTGACTCGCTCCTCACTCAGTTTCTGCCTCAACAACTCGTAGAGCAGACACGCGA 4256114 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 |||| || || | || |||||||| |||| ||||| || || ||||| || |||| Sbjct 4256115 AATCGCAGTGTAGCCCCTCGTCTCTCGAGATCAACTCGTTTGAGAAAGTTAAGCCCGGCA 4256174 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | | || | ||| || | ||| ||||| || || || || |||||||| || | Sbjct 4256175 TCAGGCCGCGCTTCTTCAACCAGAATATCGCACAGAAGCTGCCGGAGAAGAATATCCCCT 4256234 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATT 4734 | ||| ||| || || | | || | |||| || || ||| ||||||| Sbjct 4256235 CGACGCAGGCGAATGCGATCAGGCGCTCCGCGAAGGATTCGGAACCGTCG---ATCCATT 4256291 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATT 4794 | ||||| | ||||||||| ||||| || | || | || ||| || | Sbjct 4256292 GGAGGGCCCACTCGGCTTTTTTCGCCACGCAGGGGACGGTCTCGATTGCGCGGAACAGGC 4256351 Query 4795 TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 || || || | || | || || | || | | ||||| ||||| || || | Sbjct 4256352 GGCTCTTCTCGGCCGAATCCTTGATGTATGATTCCAACAAGAGGCTGTACATCTCGGAGT 4256411 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCATCTAGCTTCTGTTACTTGAACT 4913 | || || || ||||| || || || |||||||| ||| | || || | | ||| ||| Sbjct 4256412 GGATGTTCTCAATAGCGATTTGGAAACCGTAAAATGCA-CGGGCCTCGGAGATTTGGACT 4256470 Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 || || || | | | | ||||||| || ||||||||| || || || || Sbjct 4256471 TCCTTCATGAACCGAGCAGCGAGGTTTTCGAGAACAATACCGTCAGAAGCAGCGAAGAAG 4256530 Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 |||| ||||||| || |||| | |||||| | | || ||| |||||| | | | Sbjct 4256531 GCCAGTACATGAGTAATGAAGTGTTTCTCGTCATGGGTTAGGATTTCCCAGTGACGGAGA 4256590 Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATA 5093 |||| | | |||||||||||| ||||||| || || ||||| ||||| |||||||| Sbjct 4256591 TCTTGGGAGAGATCAACTTCTTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATT 4256650 Query 5094 GACCAAATATCAGGATACTGAATCGG 5119 ||| || | ||||| ||||| || Sbjct 4256651 TCCCATATTTGGGGATATTGAATTGG 4256676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427030847584799