Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nelumbo_20nucifera_20[refseq_20GCF_5F000365185.1_202013-08-08] 3,603 sequences; 804,647,751 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq257 111 2e-19 seq27 102 1e-16 >seq257 Length=623575 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||||||||| | ||| | || |||| ||| | || | || |||||||| |||||| Sbjct 424936 CCTCCCTGATCAACATAGCGAGCAGTGTCATTGAAGACACGCAGCATTGGAACAATACCA 424877 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||| ||| |||| ||||| | | | || ||||||||| || || Sbjct 424876 TTGGATGTCCCATTTGTACCACAAATGTAACTGCTAGTGGCTCGAATATTATGAACAGAA 424817 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || ||||| || | || || | | || | ||| || ||||| ||||| || || Sbjct 424816 ACACCAATTCCACCAG-CAGATTTGCTGATCACAGCACACTCCTTCAAGGTATCATATAT 424758 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 ||||| ||||| ||||| ||||| Sbjct 424757 TCCCTCGATACTATCATCTTTCATG 424733 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || ||||| ||||| || ||||| | || | | || Sbjct 424612 AGTCCCAGCATTGAAGAGAGTTGGAGAGGCATGAGTGAACCAACGCTGTGACATCAAATG 424553 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| ||||| || || ||||| | ||| || ||||| || || || | ||||| Sbjct 424552 GTATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGGATTCCAACAGCAACCCTCATCA 424494 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 |||| ||||| || ||||| || ||| | | ||||||| ||| ||| | || | Sbjct 424493 ACATGTGCTGTGGCCTTTCTACAACCTTCCCCTGAACCTTCAACAGGTAGGATCTCTCAA 424434 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||||||||| || | | || ||||||||| || || || || Sbjct 424433 GGGTTTTAAAACCGAAGAAATCATAGTCAAAGTCTCTGTCATATATGAT 424385 >seq27 Length=6178458 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||| || ||||||| |||||| | | |||||| || || |||||| || || || Sbjct 1666030 CTCCCTCTCATATTTAGTATACAATCTTTCAAACTCCTCGCCCCAACAGTCTGACAGCCC 1665971 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 ||| ||||| ||||| | ||| ||||| | ||||| | ||||| || |||||| Sbjct 1665970 AGGAGCCTCATTGGGGCAAAACAAGGACCATTGCCCATCACTTTGAACTCTTTCCATAAA 1665911 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 |||||| || ||||| |||||| ||||||||| | | || ||||||||| | || || Sbjct 1665910 GAGATCGGGAATCCAAAGAGCATAAAATAGATCCCTTGCTCGATGTTCTTCCTGTCGTG 1665852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694637513853920